Package: yanosim
Version: 0.1-8
Architecture: arm64
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 45
Depends: python3-click, python3-numpy, python3-pysam, python3-scipy, python3:any
Section: science
Priority: optional
Homepage: https://github.com/bartongroup/yanosim
Description: read simulator nanopore DRS datasets
 Yanosim has three options:
 .
 1. yanosim model:
    Creates an model of mismatches, insertions and deletions
    based on an alignment of nanopore DRS reads to a
    reference. Reads should be aligned to a transcriptome
    i.e. without spliced alignment, using minimap2. They
    should have the cs tag.
 2. yanosim quantify:
    Quantify the number of reads mapping to each
    transcript in a reference, so that the right number
    of reads can be simulated.
 3. yanosim simulate:
    Given a model created using yanosim model, and
    per-transcript read counts created using yanosim
    simulate, simulate error-prone long-reads from the
    given fasta file.
