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Wise2 - Protein vs. Protein
Program: pswdb version: $Name: wise2-4-1 $ released: unreleased
This program is freely distributed under a GNU General Public License.
   See -version for more info on copyright
Bugs and credits to: Richard Copley <copley@embl-heidelberg.de>
                     Ewan Birney <birney@sanger.ac.uk>
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Algorithm type: Smith/Waterman
Gap open:       12
Gap extension:  2
Query info from:     road.pep
Database info from:  pep.fa
Comp Matrix:         /usr/share/wise/BLOSUM62.bla
[Warning: Can't fit histogram to a db smaller than 1,000]


#High Score list
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Probe roa1_drome               Dbase ROA1_HUMAN               +  833 0
Probe roa1_drome               Dbase SW:ROA1_XENLA            +  773 0
Probe roa1_drome               Dbase Q22037                   +  662 0


#Alignments
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>roa1_drome vs ROA1_HUMAN [1]

P: 0 Sc: 833 aln_len: 368 p_len: 365 t_len: 371 match: 93.7% ID: 47.8%

probe:      22       DSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKR 
                     +S  EPE +RKLFIGGL + TTDE+L++HFE+WG + D VVM+DP TKR 
target:     4        ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKR 


probe:      71       SRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGA 
                     SRGFGF+TY+    +D A  +RPHK+DGRVVEPKRAV R+D   P A   
target:     53       SRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHL 


probe:      120      TVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFV 
                     TVKK+FVG +K+D +E  +RDYF+ +G I  I I+ D+ +GKKRGFAFV 
target:     102      TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 


probe:      169      EFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQ------NDQQGGGGGR 
                      FDD+D VDK+V+QK H +NG   +V+KAL KQ      + Q+G  G   
target:     151      TFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSG 


probe:      212      GGPGGRAGGNRGNMGGGNYGNQNGGGNW--NNGGNNWGNNRGGNDNWGN 
                        GGR GG  GN   G  GN +G G +  + GG  +G +  G + +GN 
target:     200      NFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGN 


probe:      259      NS-FGGGG----GGGGGYGGGNNSWGNN----------NPWDNGNGGGN 
                     +  +GGGG    GG  GYG G   +GN           + ++NG G G  
target:     249      DGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGRGF 


probe:      293      FGGGGNNWNNGG--NDFGGYQ-QNYGGGPQRGGGNFNNNRMQPYQGGGG 
                      GG G+N+  GG  NDFG Y  Q+   GP +GG NF      PY GGG  
target:     298      GGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGG-NFGGRSSGPYGGGGQ 


probe:      339      FKAGGGNQGNYGGNNQGFNNGGNNR                         
                     + A   NQG YGG++   + G   R                         
target:     346      YFAKPRNQGGYGGSSSSSSYGSGRR                         



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>roa1_drome vs SW:ROA1_XENLA [2]

P: 0 Sc: 773 aln_len: 359 p_len: 365 t_len: 365 match: 90.1% ID: 47.4%

probe:      26       EPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGF 
                     EPE +RKLFIGGL + TTDE+L+ HFE+WG + D VVM+DP +KRSRGF 
target:     9        EPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGF 


probe:      75       GFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKK 
                     GF+TY  +  +D A  +RPHK+DGRVVEPKRAV R+D   P A  TVKK 
target:     58       GFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKK 


probe:      124      LFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDD 
                     +FVG +K+D +E  +R+YF+ +G I  I I+ D+ +GKKRGFAFV F+D 
target:     107      IFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFED 


probe:      173      YDPVDKVVLQKQHQLNGKMVDVKKALPKQ-------NDQQGGGGGR--- 
                     +D VDK+V+QK H +N     V+KAL KQ       + ++ GG G     
target:     156      HDSVDKIVIQKYHTVNNHNSQVRKALSKQEMASVSGSQRERGGSGNYGS 


probe:      212      ---------GGPGGRAGGNRGNMGGGNYGNQNGGGNWNNG-GNNWGNNR 
                              GG GG  GGNRG  GGG +GN+  GG+  NG G  W     
target:     205      RGGFGNDNFGGRGGNFGGNRG--GGGGFGNRGYGGDGYNGDGQLWWQPS 


probe:      251      --GGNDNWGNNSFGG-GGGGGGGYGGGNNS--WGNNNPWDNGNGGGN-F 
                       G N  +G    GG G G GGGYGGG     +G N  +D  NGGG+ F 
target:     252      LLGWNRGYGAGQGGGYGAGQGGGYGGGGQGGGYGGNGGYDGYNGGGSGF 


probe:      294      GGGGNNWNNGG--NDFGGY--QQNYGGGPQRGGGNFNNNRMQPYQGGGG 
                      G G N+ + G  NDFG Y  Q +   GP +GG         PY GG G 
target:     301      SGSGGNFGSSGGYNDFGNYNSQSSSNFGPMKGGNYGGGRNSGPYGGGYG 


probe:      339      FKAGGGNQGNYGGNNQ                                  
                       +   + G YGG  +                                  
target:     350      GGSASSSSG-YGGGRR                                  



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>roa1_drome vs Q22037 [3]

P: 0 Sc: 662 aln_len: 338 p_len: 365 t_len: 346 match: 91.8% ID: 40.2%

probe:      22       DSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKR 
                     D+  EPE++RK+F+GGL   TTD+ ++  + ++G I D++VM+DP TKR 
target:     14       DASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKR 


probe:      71       SRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGA 
                     SRGFGF+T+S  + +D A K RPH IDG+ V+PKRAVPR D +   +   
target:     63       SRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNV 


probe:      120      TVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFV 
                     + K+L+V  +++DH E  + +YF  +G +    I++DK T K RGF FV 
target:     112      STKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFV 


probe:      169      EFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQGGGGGRGGPGGR 
                      FDD+D VD+ VLQK H +NG   DV+K L K  D+            R 
target:     161      TFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK--DEMSKAQMNRDRETR 


probe:      218      AGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNR-GGNDNWGNNSFGGGG 
                      G +R    GG  G   GGG W       G    GG    G   +GG   
target:     208      GGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDY 


probe:      266      GGGGGY--GGGNNSWGNNNPWDNGNGGGNFGGGGNNWNNGGNDFGGYQQ 
                     GGG G   GGG   WG       G G G  GGGG     G       QQ 
target:     257      GGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQ---QQQ 


probe:      313      NYGGGPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGF      
                        GGPQ+GGG          QGG G ++G     +  G N+ +      
target:     303      GGWGGPQQGGGGGGWGGQGQQQGGWGGQSGAQQWAHAQGGNRNY      



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