##fileformat=VCFv4.0
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FILTER=<ID=q10,Description="Quality below 10">
##INFO=<ID=HM2,Number=0,Type=Flag,Description="HapMap2 membership">
##INFO=<ID=GN,Number=1,Type=String,Description="Gene Name">
##INFO=<ID=DP,Number=0,Type=Integer,Description="Depth,etc">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A
1	100	id1_100	GTTT	G	1806	q10	DP=5;GN=gene1;HM2	GT:GQ:DP	0/1:409:35
1	110	id2_110	C	T,G	1792	PASS	DP=6	GT:GQ:DP	0/1:245:32
1	110	id1_110	CAAA	C	1792	PASS	DP=6	GT:GQ:DP	0/1:245:32
1	120	.	GA	G	628	q10	DP=21	GT:GQ:DP	1/1:21:21
1	130	id1_130	G	T	1016	PASS	DP=7;HM2	GT:GQ:DP	0/1:212:22
1	130	id2_130	GAA	GG	1016	PASS	DP=7;HM2	GT:GQ:DP	0/1:212:22
1	140	id1_140	GT	G	727	PASS	DP=8	GT:GQ:DP	0/1:150:30
1	150	id1_150	TAAAA	TA,T	246	PASS	DP=9	GT:GQ:DP	1/2:12:10
1	160	.	TAAAA	TA,T	246	PASS	DP=10	GT:GQ:DP	1/2:12:10
2	100	.	GTTT	G	1806	q10	DP=35	GT:GQ:DP	0/1:409:35
2	110	id2_110_150	CAAA	C	1792	PASS	GN=gene2;HM2	GT:GQ:DP	0/1:245:32
2	120	.	GA	G	628	q10	DP=21	GT:GQ:DP	1/1:21:21
2	130	.	GAA	G	1016	PASS	DP=22	GT:GQ:DP	0/1:212:22
2	140	.	GT	G	727	PASS	DP=30	GT:GQ:DP	0/1:150:30
2	150	.	TAAAA	TA,T	246	PASS	DP=10	GT:GQ:DP	1/2:12:10
2	160	id2_160	TAAAA	TA,TC,T	246	PASS	DP=11;GN=gene3	GT:GQ:DP	0/2:12:10
