##fileformat=VCFv4.0
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FILTER=<ID=q10,Description="Quality below 10">
##FILTER=<ID=SnpCluster,Description="Filters clusters of 'INT1' or more SNPs within a run of 'INT2' bases [win=3,count=2]">
##FILTER=<ID=StrandBias,Description="Min P-value for strand bias (INFO/PV4) [0.0001]">
##FILTER=<ID=EndDistBias,Description="Min P-value for end distance bias (INFO/PV4) [0.0001]">
##FILTER=<ID=MaxDP,Description="Maximum read depth (INFO/DP or INFO/DP4) [34]">
##FILTER=<ID=BaseQualBias,Description="Min P-value for baseQ bias (INFO/PV4) [0]">
##FILTER=<ID=MinMQ,Description="Minimum RMS mapping quality for SNPs (INFO/MQ) [10]">
##FILTER=<ID=MinAB,Description="Minimum number of alternate bases (INFO/DP4) [2]">
##FILTER=<ID=Qual,Description="Minimum value of the QUAL field [10]">
##FILTER=<ID=VDB,Description="Minimum Variant Distance Bias (INFO/VDB) [0]">
##FILTER=<ID=GapWin,Description="Window size for filtering adjacent gaps [3]">
##FILTER=<ID=MapQualBias,Description="Min P-value for mapQ bias (INFO/PV4) [0]">
##FILTER=<ID=SnpGap,Description="SNP within INT bp around a gap to be filtered [10]">
##FILTER=<ID=RefN,Description="Reference base is N []">
##FILTER=<ID=MinDP,Description="Minimum read depth (INFO/DP or INFO/DP4) [2]">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
1	100	.	GTTT	G	1806	q10;MaxDP	DP=35
1	104	.	C	.	1792	PASS	DP=32
1	105	.	C	T	246	SnpGap;SnpCluster	DP=10
1	106	.	C	A	246	SnpGap;SnpCluster	DP=10
2	107	.	C	.	1806	q10;MaxDP	DP=35
2	108	.	C	.	1792	PASS	DP=32
2	109	.	C	.	628	q10	DP=21
2	110	.	C	G	1016	SnpGap;SnpCluster	DP=22
2	111	.	C	G	727	SnpGap;SnpCluster	DP=30
2	112	.	C	G	246	SnpGap;SnpCluster	DP=10
2	113	.	C	.	246	PASS	DP=10
2	114	.	T	.	246	PASS	DP=10
2	115	.	T	.	246	PASS	DP=10
2	116	.	T	.	246	PASS	DP=10
2	117	.	T	A	246	SnpGap;SnpCluster	DP=10
2	118	.	T	C	246	SnpGap;SnpCluster	DP=10
2	119	.	TAAA	T	246	SnpCluster	DP=10
2	124	.	TA	T	246	GapWin	DP=10
2	128	.	T	TA	246	SnpCluster	DP=10
2	130	.	C	A	246	SnpGap;SnpCluster	DP=10
2	131	.	T	A	246	SnpGap;SnpCluster	DP=10
2	132	.	T	A	246	SnpGap;SnpCluster	DP=10
2	133	.	T	A	246	SnpGap;SnpCluster	DP=10
2	134	.	T	A	246	SnpGap;SnpCluster	DP=10
2	135	.	T	C	246	SnpGap;SnpCluster	DP=10
2	136	.	TT	T	246	GapWin;SnpCluster	DP=10;AF=0.1
2	138	.	TT	T	246	SnpCluster	DP=10;AF=0.2
2	140	.	TT	T	246	GapWin;SnpCluster	DP=10;AF=0.1
17	12412	.	CAGAGAGAGA	CAGAGAGAGAGA	74.8	MaxDP	INDEL;DP=5388;AF1=0.006576;CI95=0.005525,0.01105;DP4=2077,2367,21,22;MQ=47;FQ=74.8;PV4=0.88,1,0.34,0.021
17	12427	.	G	A	999	MaxDP;SnpGap	DP=5557;AF1=0.06028;CI95=0.04972,0.07182;DP4=2461,2689,106,74;MQ=47;FQ=999;PV4=0.0038,1,2.6e-12,1
17	69284	.	G	A	14.6	MaxDP;SnpGap	DP=3946;AF1=0.003468;CI95=0.002762,0.008287;DP4=1529,2177,7,9;MQ=44;FQ=14.6;PV4=1,0.035,0.098,1
17	69293	.	GTTTCATTTC	GTTTCTTTTCATTTC	999	MaxDP	INDEL;DP=3568;AF1=0.1295;CI95=0.1077,0.1547;DP4=1014,1238,118,121;MQ=44;FQ=999;PV4=0.22,1,9.4e-54,1
