# This file was generated by vcf-compare.
#
#VN 'Venn-Diagram Numbers'. Use `grep ^VN | cut -f 2-` to extract this part.
#VN The columns are: 
#VN        1  .. number of sites unique to this particular combination of files
#VN        2- .. combination of files and space-separated number, a fraction of sites in the file
VN	6	cmp-test-a.vcf.gz (100.0%)	cmp-test-b.vcf.gz (100.0%)
#SN Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
SN	Number of REF matches:	6
SN	Number of ALT matches:	5
SN	Number of REF mismatches:	0
SN	Number of ALT mismatches:	1
SN	Number of samples in GT comparison:	2
#GS Genotype Comparison Summary. Use `grep ^GS | cut -f 2-` to extract this part.
#GS The columns are:
#GS        1  .. variant type
#GS        2  .. number of mismatches
#GS        3  .. number of matches
#GS        4  .. discordance
GS	hom_RR	0	3	0.00%
GS	het_RA	1	3	25.00%
GS	hom_AA	0	4	0.00%
GS	het_AA	0	0	0.00%
SN	Non-reference Discordance Rate (NDR):	12.50
SN	Summary:	NDR 12.50, RR 0.00, RA 25.00, AA 0.00

#GC Genotype Comparison. Use `grep ^GC | cut -f 2-` to extract this part.
#GC The columns are:
#GC       1     .. Sample
#GC       2-6   .. Gtype mismatches: total hom_RR hom_AA het_RA het_AA 
#GC       7-9   .. Gtype lost: total het_RA het_AA 
#GC       10-14 .. Gtype gained: total hom_RR hom_AA het_RA het_AA 
#GC       15-17 .. Phase lost: total het_RA het_AA 
#GC       18    .. Phase gained
#GC       19-23 .. Matching sites: total hom_RR hom_AA het_RA het_AA 
#GC       24    .. Phased matches: het_RA 
#GC       25    .. Misphased matches: het_RA 
GC	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	4	2	0	2	1
GC	B	1	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	4	3	0	1	0	0	0
#AF Number of matching and mismatching genotypes vs non-ref allele frequency. Use `^AF | cut -f 2-` to extract this part.
#AF The columns are:
#AF      1  .. Non-ref allele count
#AF      2  .. Hom(RR) matches
#AF      3  .. Het(RA) matches
#AF      4  .. Hom(AA) matches
#AF      5  .. Het(AA) matches
#AF      6  .. Hom(RR) mismatches
#AF      7  .. Het(RA) mismatches
#AF      8  .. Hom(AA) mismatches
#AF      9  .. Het(AA) mismatches
AF	0.25	1	1	0	0	0	0	0	0
AF	0.50	2	2	2	0	0	0	0	0
AF	0.75	0	0	1	0	0	1	0	0
AF	1.00	0	0	1	0	0	0	0	0
#DP Counts by depth. Use `grep ^DP | cut -f 2-` to extract this part.
#DP The columns are:
#DP      1 .. depth
#DP      2 .. RR matches
#DP      3 .. RA matches
#DP      4 .. AA matches
#DP      5 .. RR -> RA mismatches
#DP      6 .. RR -> AA mismatches
#DP      7 .. RA -> RR mismatches
#DP      8 .. RA -> AA mismatches
#DP      9 .. AA -> RR mismatches
#DP     10 .. AA -> RA mismatches
DP	1	3	3	4	0	0	1	0	0	0
