Package: vcfanno
Version: 0.3.5+ds-2
Architecture: arm64
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 6363
Depends: libc6 (>= 2.34)
Built-Using: golang-1.21 (= 1.21.5-1), golang-github-biogo-hts (= 1.4.4+dfsg1-1), golang-github-brentp-bix (= 0.0~git20190718.00aa7a7+ds-2), golang-github-brentp-goluaez (= 0.0~git20160116.dd35d08-2), golang-github-brentp-irelate (= 0.0.1+ds-1), golang-github-brentp-vcfgo (= 0.0~git20190824.654ed2e-2), golang-github-klauspost-compress (= 1.17.2+ds1-1), golang-github-klauspost-pgzip (= 1.2.6-1), golang-github-pkg-errors (= 0.9.1-3), golang-github-shenwei356-xopen (= 0.0~git20181203.f4f16dd-2), golang-github-yuin-gluare (= 0.0~git20170607.d7c94f1-2), golang-github-yuin-gopher-lua (= 0.0~git20170915.0.eb1c729-5), golang-toml (= 1.3.2-2)
Section: science
Priority: optional
Homepage: https://github.com/brentp/vcfanno
Description: annotate a VCF with other VCFs/BEDs/tabixed files
 Vcfanno allows you to quickly annotate your VCF with any number of INFO
 fields from any number of VCFs or BED files. It uses a simple conf file
 to allow the user to specify the source annotation files and fields and
 how they will be added to the info of the query VCF.
 .
   * For VCF, values are pulled by name from the INFO field with special
     cases of ID and FILTER to pull from those VCF columns.
   * For BED, values are pulled from (1-based) column number.
   * For BAM, depth (count), "mapq" and "seq" are currently supported.
 .
 Vcfanno is written in go and it supports custom user-scripts written in
 Lua. It can annotate more than 8000 variants per second with 34
 annotations from 9 files on a modest laptop and over 30K variants per
 second using 12 processes on a server.
