Package: trinityrnaseq
Version: 2.15.2+dfsg-3
Architecture: amd64
Architecture-Variant: amd64v3
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5806
Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libhts3t64 (>= 1.17), libstdc++6 (>= 14), zlib1g (>= 1:1.1.4), perl:any, jaligner, libgetopt-java, libjung-free-java, bowtie, bowtie2, libwww-perl, default-jre-headless, samtools, jellyfish, r-base-core, rsem, berkeley-express, trimmomatic, parafly, ncbi-blast+, python3, liburi-perl, python3-htseq, subread, kallisto
Recommends: curl, trinityrnaseq-examples, picard-tools, tabix, gmap, salmon, rna-star, hisat2, r-cran-tidyverse, r-cran-readr, r-bioc-edger, r-bioc-deseq2, r-bioc-rots, r-cran-cluster, r-cran-fastcluster, r-bioc-ctc, r-bioc-goseq, r-cran-goplot, r-cran-gplots, r-bioc-dexseq, r-cran-ape, r-bioc-biobase, r-bioc-qvalue, r-cran-argparse, r-cran-kernsmooth, python3-numpy, python3-hisat2
Suggests: collectl, transdecoder, r-bioc-tximport, r-bioc-tximportdata
Section: science
Priority: optional
Homepage: https://github.com/trinityrnaseq/trinityrnaseq
Description: RNA-Seq De novo Assembly
 Trinity represents a novel method for the efficient and robust de novo
 reconstruction of transcriptomes from RNA-seq data. Trinity combines three
 independent software modules: Inchworm, Chrysalis, and Butterfly, applied
 sequentially to process large volumes of RNA-seq reads. Trinity partitions
 the sequence data into many individual de Bruijn graphs, each representing the
 transcriptional complexity at a given gene or locus, and then processes
 each graph independently to extract full-length splicing isoforms and to tease
 apart transcripts derived from paralogous genes.
