#!/bin/bash
set -e

pkg=transrate-tools

export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  # Double quote below to expand the temporary directory variable now versus
  # later is on purpose.
  # shellcheck disable=SC2064
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"

gunzip -r *
#do_stuff_to_test_package#

echo -e "\e[93m\e[1mTest 1\e[0m"
bam-read SRR11828387.bam SRR11828387.csv
cat SRR11828387.csv
echo -e "\e[92m\e[1mPassed\e[0m"
echo

echo -e "\e[93m\e[1mTest 2\e[0m"
bam-read SRR11828399.bam SRR11828399.csv
cat SRR11828399.csv
echo -e "\e[92m\e[1mPassed\e[0m"
echo

echo -e "\e[93m\e[1mTest 3\e[0m"
bam-read SRR11728641.bam SRR11728641.csv
cat SRR11728641.csv
echo -e "\e[92m\e[1mPassed\e[0m"
echo

echo -e "\e[93m\e[1mTest 4\e[0m"
bam-read SRR11728627.bam SRR11728627.csv
cat SRR11728627.csv
echo -e "\e[92m\e[1mPassed\e[0m"
echo
