Algorithm specific parameters: 

Full window size : 21
Core window size : 11
Wedge window size: 5
Using hydrophobicity file: GES-scale

Cutoff for certain transmembrane segments: 1.00
Cutoff for putative transmembrane segments: 0.60
Critical distance between 2 transmembrane segments: 2

Critical loop length:  60

Kingdom: procaryote

Using cyt/ext file: CYTEXT-scale


Sequence : only  (72 res)
RRRVAKLFADAGLVCITSFISPYTRRRRRRRRRRRRRRRRRRVAKLFADAGLVCITSFIS
PYTRRRRRRRRR

Found: 2 segments

Candidate membrane-spanning segments:

 Helix Begin - End   Score Certainity
     1     4 - 24    0.960 Putative
     2    43 - 63    0.960 Putative

Total of 4 structures are to be tested

HEADER    START   STOP    LEN PROB   HP  DARGLYS  DCYTEXT DNCHARGE DNNEGPOS
TOPOLOGY   1                  0.90       -24.00     0.00    -10.00    -1.00
TOPOLOGY                                  N-out        ?     N-out
EXT_LOOP      1      3      3              4.00  ( -1.01)
TRANSMEM      4     24     21 0.90 0.96
CYT_LOOP     25     72     48             28.00  ( -0.93)
//
HEADER    START   STOP    LEN PROB   HP  DARGLYS  DCYTEXT DNCHARGE DNNEGPOS
TOPOLOGY   2                  0.90        14.00     0.00      7.00    -0.92
TOPOLOGY                                   N-in        ?      N-in
CYT_LOOP      1     42     42             23.00  ( -0.90)
TRANSMEM     43     63     21 0.90 0.96
EXT_LOOP     64     72      9              9.00  ( -1.01)
//
HEADER    START   STOP    LEN PROB   HP  DARGLYS  DCYTEXT DNCHARGE DNNEGPOS
TOPOLOGY   3                  0.90        -6.00     0.00    -10.00    -1.00
TOPOLOGY                                  N-out        ?     N-out
EXT_LOOP      1      3      3              4.00  ( -1.01)
TRANSMEM      4     24     21 0.90 0.96
CYT_LOOP     25     42     18             19.00  ( -1.01)
TRANSMEM     43     63     21 0.90 0.96
EXT_LOOP     64     72      9              9.00  ( -1.01)
//
