Algorithm specific parameters: 

Full window size : 21
Core window size : 11
Wedge window size: 5
Using hydrophobicity file: GES-scale

Cutoff for certain transmembrane segments: 1.00
Cutoff for putative transmembrane segments: 0.60
Critical distance between 2 transmembrane segments: 2

Critical loop length:  60

Kingdom: procaryote

Using cyt/ext file: CYTEXT-scale


Sequence : last  (31 res)
RRRRRRRRRRVAKLFADAGLVCITSFISPYT

Found: 1 segments

Candidate membrane-spanning segments:

 Helix Begin - End   Score Certainity
     1    11 - 31    0.960 Putative

Total of 2 structures are to be tested

HEADER    START   STOP    LEN PROB   HP  DARGLYS  DCYTEXT DNCHARGE DNNEGPOS
TOPOLOGY   1                  0.90        11.00     0.00     11.00    -1.00
TOPOLOGY                                   N-in        ?      N-in
CYT_LOOP      1     10     10             11.00  ( -1.01)
TRANSMEM     11     31     21 0.90 0.96
//
