Algorithm specific parameters: 

Full window size : 21
Core window size : 11
Wedge window size: 5
Using hydrophobicity file: GES-scale

Cutoff for certain transmembrane segments: 1.00
Cutoff for putative transmembrane segments: 0.60
Critical distance between 2 transmembrane segments: 2

Critical loop length:  60

Kingdom: procaryote

Using cyt/ext file: CYTEXT-scale


Sequence : window  (21 res)
VAKLFADAIIIIITSFISPYT

Found: 1 segments

Candidate membrane-spanning segments:

 Helix Begin - End   Score Certainity
     1     1 - 21    1.210 Certain

Total of 1 structures are to be tested

HEADER    START   STOP    LEN PROB   HP  DARGLYS  DCYTEXT DNCHARGE DNNEGPOS
TOPOLOGY   1                  1.00         0.00     0.00      1.00     0.00
TOPOLOGY                                   N-in        ?      N-in
TRANSMEM      1     21     21 1.00 1.21
//
