Package: tophat-recondition
Version: 1.4-1
Architecture: all
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Steffen Moeller <moeller@debian.org>
Installed-Size: 34
Depends: python3
Suggests: tophat2
Section: science
Priority: optional
Homepage: https://github.com/cbrueffer/tophat-recondition
Description: post-processor for TopHat unmapped reads
 tophat-recondition is a post-processor for TopHat unmapped reads
 (contained in unmapped.bam), making them compatible with downstream
 tools (e.g., the Picard suite, samtools, GATK) (TopHat issue #17). It
 also works around bugs in TopHat:
 .
  * the "mate is unmapped" SAM flag is not set on any reads in the
    unmapped.bam file (TopHat issue #3)
  * the mapped mate of an unmapped read can be absent from
    accepted_hits.bam, creating a mismatch between the file and the unmapped
    read's flags (TopHat issue #16)
