#!/bin/sh -e

pkg=theseus

if [ "$AUTOPKGTEST_TMP" = "" ] ; then
  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
fi
cd $AUTOPKGTEST_TMP
cp -a /usr/share/doc/theseus/examples/* $AUTOPKGTEST_TMP
find . -name "*.gz" -exec gunzip \{\} \;

theseus 1s40.pdb
cd cytochromes
theseus -A cytc.aln -M cytc.filemap d*.pdb
theseus -A cytc.aln d*.pdb
theseus_align -f d*.pdb
