T-COFFEE, Version_11.00 (Version_11.00)
Cedric Notredame
CPU TIME:0 sec.
SCORE=953
*
B A D A V G G OOD
*
hmgb_chite : 93
hmgt_mouse : 93
hmgl_wheat : 93
hmgl_trybr : 93
1cms : 93
4pep : 93
4ape : 93
3app : 93
2apr : 93
1cms_1 : 93
1cms : 97
4pep : 97
4ape : 97
3app : 97
2apr : 97
1cms_1 : 97
cons : 95
hmgb_chite ad---kpkrp lsa y------m---------------lwlnsaresi------------------krenpdf-kvtev a k-kggelwr------------------------------glk--dksewe----------------------
hmgt_mouse k-----pkrp rsa y------n---------------iyvsesfqea----------------------kdd-saqgk l k-lvneawk------------------------------nlspeekqayi----------------------
hmgl_wheat dp--nkpkra psa f------f---------------vfmgefreef------------------kqknpknksvaav g k-aagerwk------------------------------slsesekapyv----------------------
hmgl_trybr kkdsnapkra mts f------m---------------ffssdfrskh----------------------sdl-sivem s k-aagaawk------------------------------elgpeerkvye----------------------
1cms GE---VASVP LTN Y------LDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSS---T F Q-NLGKPLSIHYGTGS-MQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFD--------G ILGMAYP
4pep -----IGDEP LEN Y------LDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSS---T F E-ATSQELSITYGTGS-MTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFD--------G ILGLAYP
4ape STG-SATTTP IDS-------LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKST---T A KLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTID--------G LLGLAFS
3app AASGVATNTP TA--------NDEEYITPVTIGG--TTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSA-----T G KELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNND--------G LLGLAFS
2apr AG---VGTVP MTD YG-----NDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTN-CGSGQTKYDPNQSS---T Y Q-ADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAASFAS-GPND--------G LLGLGFD
1cms_1 YTG-SLHWVP VTV QQYWQ F TVDSVTISGVVVACEG-GCQAILDTGTSKLVGPSS------------------------------------------------------DILNIQQAIGATQNQYGEFDIDCDNL S YMPTVV FE INGKMYP
1cms --GEVASVPLT-------NYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPR-KSS---TFQNLGKPLSIHYGTG-SMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFD--------GILGMAYP
4pep ----IGDEPLE-------NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPD-DSS---TFEATSQELSITYGTG-SMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFD--------GILGLAYP
4ape -STGSATTTPI-------DSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTT---AKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTID--------GLLGLAFS
3app AASGVATNTPT-------AN-DEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNP--SAT---GKELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNND--------GLLGLAFS
2apr AGVGTVPMTDY-------GN-DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCG-SGQTKYDPN-QSS---TYQADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAASFASGPN-D--------GLLGLGFD
1cms_1 ------------------------YTGSLHWVPVTVQQYWQFTVDS---VTISGVVVACEGGCQAILDTG-TSK---LVGPSSDILNIQQAIG-ATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTS--------QDQGFCTS
cons
hmgb_chite ------------------------aka--at------akqnyiral qe yer--n g-----------g
hmgt_mouse ------------------------qla--kd------drirydnem ks wee--q m--a--------e
hmgl_wheat ------------------------aka--nk------lkgeynkai aa ynk--g e--s--------a
hmgl_trybr ------------------------ema--ek------dkerykrem---------------------
1cms SLASEY---SIPV--------F--DNM MNRH----LVAQDLFSVYM-D RNG--Q ESMLTLGAIDPSY
4pep SISASG---ATPV--------F--DNL WDQG----LVSQDLFSVYL-S SND D-S GSVVLLGGIDSSY
4ape TLNTVSPTQQKTF--------F--DNA--KA----SLDSPVFTADL-G YH---A PGTYNFGFIDTTA
3app SINTVQPQSQTTF--------F--DTV--KS----SLAQPLFAVAL-K HQ---Q PGVYDFGFIDSSK
2apr TITTVRG--VKTP--------M--DNL ISQG----LISRPIFGVYL-G KAK NGG GGEYIFGGYDSTK
1cms_1 LTPSAY---TS-Q DQGFCTSGF QSENH SQKWILGD VFIREYYSVFD-R ANN--L VGLA--KAI----
1cms SLASEY---SIPVFDNM--------------MNRHLVAQDLFSVYM DR-NG QE--SMLTLGAIDPSY
4pep SISASG---ATPVFDNL--------------WDQGLVSQDLFSVYL SS-ND DSG-SVVLLGGIDSSY
4ape TLNTVSPTQQKTFFDNA--------------KAS--LDSPVFTADL GY-HA PG---TYNFGFIDTTA
3app SINTVQPQSQTTFFDTV--------------KSS--LAQPLFAVAL KH-QQ PG---VYDFGFIDSSK
2apr TITTVR--GVKTPMDNL--------------ISQGLISRPIFGVYL GK-AK NGG GGEYIFGGYDSTK
1cms_1 GFQSEN------HSQKW--------------ILGDVFIREYYSVFD RA-NN LVG----LAKAI----
cons :