# Serialized Form

## Package org.snpsift.annotate

### Class org.snpsift.annotate.MarkerFile

class MarkerFile extends org.snpeff.interval.Marker implements Serializable

serialVersionUID:
  -3649469013731964066L

#### Serialized Fields

##### fileIdx

    long fileIdx

## Package org.snpsift.annotate.mem

### Class org.snpsift.annotate.mem.Fields

class Fields extends Object implements Serializable

serialVersionUID:
  2024092801L

#### Serialized Fields

##### fieldByName

    Map<String, org.snpeff.vcf.VcfHeaderInfo> fieldByName

##### fieldNames

    String[] fieldNames

## Package org.snpsift.annotate.mem.arrays

### Class org.snpsift.annotate.mem.arrays.BoolArray

class BoolArray extends Object implements Serializable

serialVersionUID:
  2024073104L

#### Serialized Fields

##### bytes

    byte[] bytes

### Class org.snpsift.annotate.mem.arrays.EnumArray

class EnumArray extends StringArrayBase implements Serializable

serialVersionUID:
  2024080900L

#### Serialized Fields

##### data

    byte[] data

##### enum2ord

    Map<String,Integer> enum2ord

##### ord2enum

    ArrayList<String> ord2enum

### Class org.snpsift.annotate.mem.arrays.PosIndex

class PosIndex extends Object implements Serializable

serialVersionUID:
  2024073105L

#### Serialized Fields

##### positions

    int[] positions

##### size

    int size

### Class org.snpsift.annotate.mem.arrays.StringArray

class StringArray extends StringArrayBase implements Serializable

serialVersionUID:
  2024073106L

#### Serialized Fields

##### data

    byte[] data

##### index2offset

    int[] index2offset

##### offset

    int offset

### Class org.snpsift.annotate.mem.arrays.StringArrayBase

class StringArrayBase extends Object implements Serializable

serialVersionUID:
  20240731059L

#### Serialized Fields

##### currentIndex

    int currentIndex

## Package org.snpsift.annotate.mem.database

### Class org.snpsift.annotate.mem.database.VariantDataFrame

class VariantDataFrame extends Object implements Serializable

serialVersionUID:
  2024092701L

#### Serialized Fields

##### dataFrames

    DataFrame[] dataFrames

##### fields

    Fields fields

##### prefix

    String prefix

##### variantTypeCounter

    VariantTypeCounter variantTypeCounter

## Package org.snpsift.annotate.mem.dataFrame

### Class org.snpsift.annotate.mem.dataFrame.DataFrame

class DataFrame extends Object implements Serializable

serialVersionUID:
  2024073101L

#### Serialized Fields

##### alts

    StringArray alts

##### columns

    Map<String, DataFrameColumn<?>> columns

##### currentIdx

    int currentIdx

##### fields

    Fields fields

##### posIndex

    PosIndex posIndex

##### refs

    StringArray refs

##### variantCategory

    VariantCategory variantCategory

##### variantTypeCounter

    VariantTypeCounter variantTypeCounter

### Class org.snpsift.annotate.mem.dataFrame.DataFrameDel

class DataFrameDel extends DataFrame implements Serializable

serialVersionUID:
  2024073102L

### Class org.snpsift.annotate.mem.dataFrame.DataFrameIns

class DataFrameIns extends DataFrame implements Serializable

serialVersionUID:
  2024073103L

### Class org.snpsift.annotate.mem.dataFrame.DataFrameMixed

class DataFrameMixed extends DataFrame implements Serializable

serialVersionUID:
  2024073104L

### Class org.snpsift.annotate.mem.dataFrame.DataFrameMnp

class DataFrameMnp extends DataFrame implements Serializable

serialVersionUID:
  2024073105L

### Class org.snpsift.annotate.mem.dataFrame.DataFrameOther

class DataFrameOther extends DataFrame implements Serializable

serialVersionUID:
  2024073106L

### Class org.snpsift.annotate.mem.dataFrame.DataFrameRow

class DataFrameRow extends Object implements Serializable

serialVersionUID:
  2024073108L

#### Serialized Fields

##### alt

    String alt

##### dataFrame

    DataFrame dataFrame

##### idx

    int idx

##### pos

    int pos

##### ref

    String ref

##### values

    Map<String,Object> values

### Class org.snpsift.annotate.mem.dataFrame.DataFrameSnp

class DataFrameSnp extends DataFrame implements Serializable

serialVersionUID:
  2024073109L

#### Serialized Fields

##### alt

    String alt

## Package org.snpsift.annotate.mem.dataFrame.dataFrameColumn

### Class org.snpsift.annotate.mem.dataFrame.dataFrameColumn.DataFrameColumn

class DataFrameColumn extends Object implements Serializable

serialVersionUID:
  2024073103L

#### Serialized Fields

##### isNUllData

    BoolArray isNUllData

##### name

    String name

### Class org.snpsift.annotate.mem.dataFrame.dataFrameColumn.DataFrameColumnBool

class DataFrameColumnBool extends DataFrameColumn<Boolean> implements Serializable

serialVersionUID:
  202407310301L

#### Serialized Fields

##### data

    BoolArray data

### Class org.snpsift.annotate.mem.dataFrame.dataFrameColumn.DataFrameColumnChar

class DataFrameColumnChar extends DataFrameColumn<Character> implements Serializable

serialVersionUID:
  202407310302L

#### Serialized Fields

##### data

    char[] data

### Class org.snpsift.annotate.mem.dataFrame.dataFrameColumn.DataFrameColumnDouble

class DataFrameColumnDouble extends DataFrameColumn<Double> implements Serializable

serialVersionUID:
  202407310303L

#### Serialized Fields

##### data

    double[] data

### Class org.snpsift.annotate.mem.dataFrame.dataFrameColumn.DataFrameColumnInt

class DataFrameColumnInt extends DataFrameColumn<Integer> implements Serializable

serialVersionUID:
  202407310304L

#### Serialized Fields

##### data

    int[] data

### Class org.snpsift.annotate.mem.dataFrame.dataFrameColumn.DataFrameColumnLong

class DataFrameColumnLong extends DataFrameColumn<Long> implements Serializable

serialVersionUID:
  202407310305L

#### Serialized Fields

##### data

    long[] data

### Class org.snpsift.annotate.mem.dataFrame.dataFrameColumn.DataFrameColumnString

class DataFrameColumnString extends DataFrameColumn<String> implements Serializable

serialVersionUID:
  202407310306L

#### Serialized Fields

##### data

    StringArrayBase data

## Package org.snpsift.annotate.mem.variantTypeCounter

### Class org.snpsift.annotate.mem.variantTypeCounter.VariantTypeCounter

class VariantTypeCounter extends Object implements Serializable

serialVersionUID:
  2024073102L

#### Serialized Fields

##### countByCategory

    int[] countByCategory

##### countVariants

    long countVariants

##### countVcfEntries

    long countVcfEntries

##### fields

    Fields fields

##### fieldsString

    String[] fieldsString

##### sizesByField

    Map<String,int[]> sizesByField

## Package org.snpsift.fileIterator

### Class org.snpsift.fileIterator.DbNsfpEntry

class DbNsfpEntry extends org.snpeff.interval.Variant implements Serializable

serialVersionUID:
  -3275792763917755927L

#### Serialized Fields

##### dbNsfp

    DbNsfp dbNsfp

##### line

    String line

##### values

    Map<String,String> values