# Uses of Package
org.snpsift.annotate

Packages that use org.snpsift.annotate
Package
Description
org.snpsift
org.snpsift.annotate
org.snpsift.fileIterator

Classes in org.snpsift.annotate used by org.snpsift
Class
Description
AnnotateVcfDb
Annotate using a VCF "database"
Classes in org.snpsift.annotate used by org.snpsift.annotate
Class
Description
AnnotateVcfDb
Annotate using a VCF "database"
DbMarker
Use a file as a 'marker' database.
DbVcf
Use a VCF file as a database for annotations A VCF database consists of a VCF file and an index.
MarkerFile
Represents a marker in a file (located at 'fileIdx' bytes since the beginning of the file)
QueryResult
A database query and a result.
VcfIndexDataChromo
Represents a set of VCF entries stored in an (uncompressed) file All entries belong to the same chromosome
VcfIndexTree
Interval tree structure for an 'VcfIndexChromo' The whole tree is stored in a single class as a set of arrays.
Classes in org.snpsift.annotate used by org.snpsift.fileIterator
Class
Description
DbMarker
Use a file as a 'marker' database.