# Package org.snpeff.align

package org.snpeff.align

Related Packages
Package
Description
org.snpeff
Classes
Class
Description
NeedlemanWunsch
Needleman-Wunsch (global sequence alignment) algorithm for sequence alignment (short strings, since it's not memory optimized)
NeedlemanWunschOverlap
Needleman-Wunsch algorithm for string alignment (short strings, since it's not memory optimized)
SmithWaterman
Smith-Waterman (local sequence alignment) algorithm for sequence alignment (short strings, since it's not memory optimized)
StringDiff
VariantRealign
Re-align a variant towards the leftmost (rightmost) position Note: We perform a 'progressive' realignment, asking for more reference sequence as we need it
VcfRefAltAlign
Needleman-Wunsch (global sequence alignment) algorithm for sequence alignment Only used for short strings (algorithm is not optimized)