# Uses of Package
org.snpeff.fileIterator

Packages that use org.snpeff.fileIterator
Package
Description
org.snpeff
org.snpeff.fileIterator
org.snpeff.fileIterator.microCosm
org.snpeff.genBank
org.snpeff.ped
org.snpeff.snpEffect
org.snpeff.snpEffect.commandLine
org.snpeff.vcf

Classes in org.snpeff.fileIterator used by org.snpeff
Class
Description
RegulationFileIterator
Opens a regulation file and create Regulation elements.
Classes in org.snpeff.fileIterator used by org.snpeff.fileIterator
Class
Description
BinSeqFileIterator
Reads all sequences from a file Warning: You should always call "close()" at the end of the iteration.
BlastResultEntry
FileIterator
Opens a file and iterates over all objects <T> in the file Note: The file is not loaded in memory, thus allows to iterate over very large files
LineClassFileIterator
Iterate on each line.
LineFileIterator
Iterate on each line in this file
MarkerFileIterator
Opens a Marker file and iterates over all markers
MatrixEntry
A simple entry in a 'Matrix' file
RegulationFileIterator
Opens a regulation file and create Regulation elements.
VariantFileIterator
Opens a sequence change file and iterates over all sequence changes
VcfFileIterator
Opens a VCF file and iterates over all entries (i.e.
Classes in org.snpeff.fileIterator used by org.snpeff.fileIterator.microCosm
Class
Description
FileIterator
Opens a file and iterates over all objects <T> in the file Note: The file is not loaded in memory, thus allows to iterate over very large files
LineClassFileIterator
Iterate on each line.
Classes in org.snpeff.fileIterator used by org.snpeff.genBank
Class
Description
LineFileIterator
Iterate on each line in this file
Classes in org.snpeff.fileIterator used by org.snpeff.ped
Class
Description
FileIterator
Opens a file and iterates over all objects <T> in the file Note: The file is not loaded in memory, thus allows to iterate over very large files
Classes in org.snpeff.fileIterator used by org.snpeff.snpEffect
Class
Description
VcfFileIterator
Opens a VCF file and iterates over all entries (i.e.
Classes in org.snpeff.fileIterator used by org.snpeff.snpEffect.commandLine
Class
Description
VcfFileIterator
Opens a VCF file and iterates over all entries (i.e.
Classes in org.snpeff.fileIterator used by org.snpeff.vcf
Class
Description
VcfFileIterator
Opens a VCF file and iterates over all entries (i.e.