# Package org.snpeff.motif

package org.snpeff.motif

Related Packages
Package
Description
org.snpeff
Classes
Class
Description
Jaspar
Load PWM matrices from a Jaspar file
MotifLogo
Create a DNA logo for a PWM References: - See WebLogo http://weblogo.berkeley.edu/ - "WebLogo: A Sequence Logo Generator"
Pwm
Create a DNA motif count matrix Refrence http://en.wikipedia.org/wiki/Position-specific_scoring_matrix
PwmAndSeqs
Create a DNA motif count matrix and also count the number of sequences in that contribute to this motif.