# Package org.snpeff.interval.codonChange

package org.snpeff.interval.codonChange

Related Packages
Package
Description
org.snpeff.interval
org.snpeff.interval.tree
Classes
Class
Description
CodonChange
Analyze codon changes based on a variant and a Transcript
CodonChangeDel
Calculate codon changes produced by a deletion
CodonChangeDup
Calculate codon changes produced by a duplication
CodonChangeIns
Calculate codon changes produced by an insertion
CodonChangeInterval
Calculate codon changes produced by a Interval Note: An interval does not produce any effect.
CodonChangeInv
Calculate codon changes produced by an inversion
CodonChangeMixed
Calculate codon changes produced by a 'mixed' variant Essentially every 'mixed' variant can be represented as a concatenation of a SNP/MNP + an INS/DEL
CodonChangeMnp
Calculate codon changes produced by a MNP
CodonChangeSnp
Calculate codon changes produced by a SNP
CodonChangeStructural
Calculate codon changes produced by a duplication