# Package org.snpeff.fastq

package org.snpeff.fastq

Related Packages
Package
Description
org.snpeff
Classes
Class
Description
FastqSplit
Split a fastq into N files
FastqTools
Simple maipulation of fastq sequences
FastqTrimmer
Trim fastq sequence when quality drops below a threshold The resulting sequence has to ba at least 'minBases'
FastqTrimmerAdrian
Trim fastq sequence when: - Median quality drops below a threshold (mean is calculated every 2 bases instead of every base) - Sequence length is at least 'minBases' From Adrian Platts ...Also the sliding window was not every base.
FastqTrimmerMedian
Trim fastq sequence when median quality drops below a threshold