# Hierarchy For Package org.snpeff.snpEffect.commandLine

Package Hierarchies:

- All Packages

## Class Hierarchy

- java.lang.Object
  - org.snpeff.SnpEff (implements org.snpeff.snpEffect.commandLine.CommandLine)
    - org.snpeff.snpEffect.commandLine.SnpEffCmdAcat
    - org.snpeff.snpEffect.commandLine.SnpEffCmdBuild
    - org.snpeff.snpEffect.commandLine.SnpEffCmdBuildNextProt
    - org.snpeff.snpEffect.commandLine.SnpEffCmdCds
    - org.snpeff.snpEffect.commandLine.SnpEffCmdClosest
    - org.snpeff.snpEffect.commandLine.SnpEffCmdCount
    - org.snpeff.snpEffect.commandLine.SnpEffCmdDatabases
    - org.snpeff.snpEffect.commandLine.SnpEffCmdDownload
    - org.snpeff.snpEffect.commandLine.SnpEffCmdDump
    - org.snpeff.snpEffect.commandLine.SnpEffCmdEff (implements org.snpeff.snpEffect.VcfAnnotator)
    - org.snpeff.snpEffect.commandLine.SnpEffCmdGenes2Bed
    - org.snpeff.snpEffect.commandLine.SnpEffCmdGsa
    - org.snpeff.snpEffect.commandLine.SnpEffCmdLen
    - org.snpeff.snpEffect.commandLine.SnpEffCmdPdb
    - org.snpeff.snpEffect.commandLine.SnpEffCmdProtein
    - org.snpeff.snpEffect.commandLine.SnpEffCmdSeq
    - org.snpeff.snpEffect.commandLine.SnpEffCmdShow
    - org.snpeff.snpEffect.commandLine.SnpEffCmdTranslocationsReport

## Interface Hierarchy

- org.snpeff.snpEffect.commandLine.CommandLine

## Enum Class Hierarchy

- java.lang.Object
  - java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    - org.snpeff.snpEffect.commandLine.SnpEffCmdDump.DumpFormat