# Uses of Class
org.snpeff.align.NeedlemanWunsch

Packages that use NeedlemanWunsch
Package
Description
org.snpeff.align

## Uses of NeedlemanWunsch in org.snpeff.align

Subclasses of NeedlemanWunsch in org.snpeff.align
Modifier and Type
Class
Description
`class`
`SmithWaterman`
Smith-Waterman (local sequence alignment) algorithm for sequence alignment (short strings, since it's not memory optimized)
`class`
`VcfRefAltAlign`
Needleman-Wunsch (global sequence alignment) algorithm for sequence alignment Only used for short strings (algorithm is not optimized)