# Package org.snpeff.geneSets.algorithm

package org.snpeff.geneSets.algorithm

Related Packages
Package
Description
org.snpeff.geneSets
Class
Description
EnrichmentAlgorithm
A generic enrichment algorithm for selecting gene-sets from a collection of gene-sets
EnrichmentAlgorithm.EnrichmentAlgorithmType
EnrichmentAlgorithmGreedy
A generic greedy enrichment algorithm for selecting gene-sets
EnrichmentAlgorithmGreedyVariableSize
A greedy enrichment algorithm for selecting gene-sets using a variable geneSet-size strategy: i) Select only from geneSets in low-sizes e.g.
FisherPValueAlgorithm
FisherPValueGreedyAlgorithm
LeadingEdgeFractionAlgorithm
Leading edge fraction algorithm References: "Common Inherited Variation in Mitochondrial Genes Is Not Enriched for Associations with Type 2 Diabetes or Related Glycemic Traits" http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001058 See page 12, "Step 4"
NoneAlgorithm
An algorithm that does nothing
RankSumPValueAlgorithm
RankSumPValueGreedyAlgorithm