# Package org.snpeff.binseq.indexer

package org.snpeff.binseq.indexer

Related Packages
Package
Description
org.snpeff.binseq
org.snpeff.binseq.coder
org.snpeff.binseq.comparator
Class
Description
OverlapFilter<T extends BinarySequence>
Indicate whether an overlap between two sequences should be considered or not
OverlapFilterCompareAllAll
Only allow overlaps between sequences mapped to same/different partition
OverlapFilterDnaId
Only allow sequences with different IDs to be overlapped
OverlapRessult<T extends BinarySequence>
An object used to store overlap parameters
SequenceIndexer<T extends BinarySequence>
A collection of sequences that are indexed using some algorithm Note: The ID is just the position in the array.
SuffixIndexerNmer<T extends BinarySequence>
Index all suffixes of all the sequences (it indexes using Nmers).