# Package org.snpeff

package org.snpeff

Class
Description
Fastq2Fastq
Convert FASTQ (phred64) file to FASTQ (phred33)
Pcingola
Author's data
PromoterSequences
Get promoter sequences from genes
Qseq2Fastq
Convert qseq file to fastq
RegulationConsensusMultipleBed
Create a regulation consensus from multiple BED files
RegulationFileConsensus
Create a regulation consensus from a regulation file.
RegulationFileSplitBytType
Split regulation files into smaller files (one per 'regulation type') Regulation files can be quite large and we cannot read them into memory.
SnpEff
SnpEff's main command line program
SnpEff.GeneDatabaseFormat
Available gene database formats
SnpEff.InputFormat
Available input formats
SnpEff.OutputFormat
Available output formats
Zzz
How to calculate hydrogen bonds: - https://en.wikipedia.org/wiki/Hydrogen_bond#:~:text=A%20hydrogen%20bond%20(or%20H,hydrogen%20bond%20acceptor%20(Ac).