# Package org.snpeff.probablility

package org.snpeff.probablility

Related Packages
Package
Description
org.snpeff
org.snpeff.probablility.bootstrap
Classes
Class
Description
Binomial
Calculate binomial distribution References http://en.wikipedia.org/wiki/Binomial_distribution
CochranArmitageTest
Calculate a Cochran-Armitage test Reference: http://en.wikipedia.org/wiki/Cochran-Armitage_test_for_trend The trend test is applied when the data take the form of a 2 x k contingency table.
FisherExactTest
Calculate Fisher's exact test (based on hypergeometric distribution)
Hypergeometric
Calculate hypergeometric distribution using an optimized algorithm that avoids problems with big factorials.
NormalDistribution
Calculate Normal distribution (PDF invalid input: '&' CDF) using more precision if required
RandMarker
Create random markers using a uniform distribution
RankSumNoReplacementPdf
Calculate rank sum probability distribution function (pdf) and cumulative distribution function (cdf).
RankSumNoReplacementSimulate
Calculate rank sum probability distribution function (pdf) and cumulative distribution function (cdf).
RankSumPdf
Calculate rank sum probability distribution function (pdf) and cumulative distribution function (cdf).