# Hierarchy For Package org.snpeff.interval

Package Hierarchies:

- All Packages

## Class Hierarchy

- java.lang.Object
  - org.snpeff.interval.ChromosomeSimpleName
  - org.snpeff.interval.CircularCorrection
  - org.snpeff.interval.CytoBands
  - org.snpeff.interval.ExonSpliceCharacterizer
  - org.snpeff.interval.Genes (implements java.lang.Iterable<T>, java.io.Serializable)
  - org.snpeff.interval.Interval (implements java.lang.Cloneable, java.lang.Comparable<T>, java.io.Serializable)
    - org.snpeff.interval.Marker (implements org.snpeff.serializer.TxtSerializable)
      - org.snpeff.interval.Cds (implements org.snpeff.interval.MarkerWithFrame)
      - org.snpeff.interval.Chromosome
      - org.snpeff.interval.Custom (implements java.lang.Iterable<T>)
        - org.snpeff.interval.GffMarker
          - org.snpeff.interval.Gtf2Marker
      - org.snpeff.interval.Downstream
      - org.snpeff.interval.GenericMarker
      - org.snpeff.interval.Genome (implements java.lang.Iterable<T>)
      - org.snpeff.interval.Intergenic
      - org.snpeff.interval.IntergenicConserved
      - org.snpeff.interval.IntervalAndSubIntervals<T> (implements java.lang.Iterable<T>)
        - org.snpeff.interval.Gene
        - org.snpeff.interval.Transcript
      - org.snpeff.interval.Intron
      - org.snpeff.interval.IntronConserved
      - org.snpeff.interval.MarkerParentId
      - org.snpeff.interval.MarkerSeq
        - org.snpeff.interval.Exon (implements org.snpeff.interval.MarkerWithFrame)
      - org.snpeff.interval.MicroRnaBindingSite
      - org.snpeff.interval.Motif
      - org.snpeff.interval.NextProt
      - org.snpeff.interval.ProteinInteractionLocus
        - org.snpeff.interval.ProteinProteinInteractionLocus
        - org.snpeff.interval.ProteinStructuralInteractionLocus
      - org.snpeff.interval.RareAminoAcid
      - org.snpeff.interval.Regulation
      - org.snpeff.interval.SpliceSite
        - org.snpeff.interval.SpliceSiteAcceptor
        - org.snpeff.interval.SpliceSiteBranch
          - org.snpeff.interval.SpliceSiteBranchU12
        - org.snpeff.interval.SpliceSiteDonor
        - org.snpeff.interval.SpliceSiteRegion
      - org.snpeff.interval.Upstream
      - org.snpeff.interval.Utr
        - org.snpeff.interval.Utr3prime
        - org.snpeff.interval.Utr5prime
      - org.snpeff.interval.Variant
        - org.snpeff.interval.VariantBnd
        - org.snpeff.interval.VariantNonRef
        - org.snpeff.interval.VariantWithScore
  - org.snpeff.interval.IntervalComparatorByEnd (implements java.util.Comparator<T>)
  - org.snpeff.interval.IntervalComparatorByStart (implements java.util.Comparator<T>)
  - org.snpeff.interval.IntervalSetIterator (implements java.lang.Iterable<T>, java.util.Iterator<E>)
  - org.snpeff.interval.Markers (implements java.util.Collection<E>, java.io.Serializable)
  - org.snpeff.interval.MarkerUtil

## Interface Hierarchy

- org.snpeff.interval.MarkerWithFrame

## Enum Class Hierarchy

- java.lang.Object
  - java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    - org.snpeff.interval.BioType
    - org.snpeff.interval.Exon.ExonSpliceType
    - org.snpeff.interval.FrameType
    - org.snpeff.interval.Gene.GeneType
    - org.snpeff.interval.GffType
    - org.snpeff.interval.TranscriptSupportLevel
    - org.snpeff.interval.Variant.VariantType