Package: snippy
Version: 4.6.0+dfsg-6
Architecture: all
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 100
Depends: perl:any, any2fasta, bcftools, bedtools, bwa, freebayes (>= 1.3.6-2), libbio-perl-perl, libvcflib-tools, minimap2, parallel, samclip, samtools, seqtk, snp-sites, snpeff, vt
Section: science
Priority: optional
Homepage: https://github.com/tseemann/snippy/
Description: rapid haploid variant calling and core genome alignment
 Snippy finds SNPs between a haploid reference genome and your NGS
 sequence reads. It will find both substitutions (snps) and
 insertions/deletions (indels). It will use as many CPUs as you can give
 it on a single computer (tested to 64 cores). It is designed with speed
 in mind, and produces a consistent set of output files in a single
 folder. It can then take a set of Snippy results using the same
 reference and generate a core SNP alignment (and ultimately a
 phylogenomic tree).
