# Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

## A

abs() - Method in class ij.process.FloatProcessor
abs() - Method in class ij.process.ImageProcessor
  If this is a 32-bit or signed 16-bit image, performs an absolute value transform, otherwise does nothing.
add(double) - Method in class ij.process.FloatProcessor
add(double) - Method in class ij.process.ImageProcessor
  Adds 'value' to each pixel in the image or ROI.
add(int) - Method in class ij.process.FloatProcessor
add(int) - Method in class ij.process.ImageProcessor
  Adds 'value' to each pixel in the image or ROI.
add(int) - Method in class skyview.util.SmartIntArray
  add element (integer) to array , check size and increase it if necessary
add(String, String) - Static method in class skyview.executive.Settings
  Add a setting to a list -- but only if it is not already in the list.
add(Rotater) - Method in class skyview.geometry.Rotater
  Add an additional rotation to the current rotation.
add(Scaler) - Method in class skyview.geometry.Scaler
  Add a second affine transformation to this one and return the composite transformation.
add(Transformer) - Method in class skyview.geometry.Converter
  Add a component to the transformation
addArgs(String[]) - Static method in class skyview.executive.Settings
  Add settings from a list of arguments.
addColor(Color) - Method in class ij.process.ImageProcessor
  Adds the color to the end of the color model if not already there.
addColor(Color, int) - Method in class ij.process.ImageProcessor
  Adds the color to the color model at the specified index.
addColumn(String, String, String) - Method in class heasarc.db.votable.StreamToJava
  Add a description o fone of the columns in the table
addCriterion(String, String, String) - Method in class skyview.vo.ConeQuerier
addField() - Method in class net.ivoa.util.CGI
addField(String, String) - Method in class net.ivoa.util.CGI
AddingMosaicker - Class in skyview.process
  A mosaicker is an object which creates a new image from a set of input images.
AddingMosaicker() - Constructor for class skyview.process.AddingMosaicker
addList(byte[]) - Method in class skyview.util.HistoMatcher
addPattern(String, Pattern) - Method in class skyview.request.Detainter
addPixels(String, int) - Method in class skyview.process.Mosaicker
addPlotString(String, double, double, double) - Method in class ij.process.ImageProcessor
addPosToURL(String, double, double, double) - Method in class skyview.survey.SIAP2Generator
addPosToURL(String, double, double, double) - Method in class skyview.survey.SIAPGenerator
addScaler(Scaler) - Method in class skyview.geometry.WCS
  Return a new WCS from the existing WCS where we add a scale.
addToken(String) - Static method in class skyview.executive.Settings
  Add a single argument token
adjustCoordX(double) - Static method in class skyview.util.Utilities
  Ensure that a value is in the region -PI to PI.
adjustCoordY(double) - Static method in class skyview.util.Utilities
  Ensure that a value is in the approrpiate range from -PI/2 to PI/2.
after(String) - Method in class skyview.test.HCounter
  IS the current value after (or equal to) this input?
Ait - Class in skyview.geometry.projecter
  This class implements the AIT (Hammer-Aitov) projection.
Ait() - Constructor for class skyview.geometry.projecter.Ait
Ait.AitDeproj - Class in skyview.geometry.projecter
AitDeproj() - Constructor for class skyview.geometry.projecter.Ait.AitDeproj
AkariGenerator - Class in skyview.survey
AkariGenerator() - Constructor for class skyview.survey.AkariGenerator
allSurveys() - Static method in class skyview.survey.XMLSurveyDescription
allValid() - Method in class skyview.geometry.Projecter
  Are all points in the projection plane valid?
allValid() - Method in class skyview.geometry.projecter.Car
  The entire plane is valid
allValid() - Method in class skyview.geometry.projecter.Stg
  The entire projection plane is valid
allValid() - Method in class skyview.geometry.projecter.Tan
  The entire projection plane is valid
and(int) - Method in class ij.process.FloatProcessor
and(int) - Method in class ij.process.ImageProcessor
  Binary AND of each pixel in the image or ROI with 'value'.
ang(double[], double[]) - Static method in class skyview.geometry.projecter.ToastPixelSize
AngScale - Class in skyview.data
  Find an appropriate delta to use for getting grid intervals.
AngScale() - Constructor for class skyview.data.AngScale
angularDistance(double, double, double, double) - Static method in class skyview.util.Utilities
  Calculates angular distance between two points on a sphere.
antialiasedText - Variable in class ij.process.ImageProcessor
append(String) - Method in class heasarc.db.votable.Base64
  Build up the string that will be decoded.
applyBeforeScaling() - Method in class skyview.geometry.Distorter
applyBeforeScaling() - Method in class skyview.geometry.distorter.SIP
applyMacro(String) - Method in class ij.process.ImageProcessor
  Uses the Process/Math/Macro command to apply macro code to this image.
applyTable(int[]) - Method in class ij.process.FloatProcessor
applyTable(int[]) - Method in class ij.process.ImageProcessor
  Transforms the image or ROI using a lookup table.
approximate(double[]) - Method in class skyview.geometry.WCS
  Approximate a WCS (which presumably includes a Distorter) with a standard, locally correct, WCS.
Arc - Class in skyview.geometry.projecter
Arc() - Constructor for class skyview.geometry.projecter.Arc
Arc.ArcDeproj - Class in skyview.geometry.projecter
ArcDeproj() - Constructor for class skyview.geometry.projecter.Arc.ArcDeproj
arrayColumn(String, String) - Method in class heasarc.db.votable.StreamToJava
autoThreshold() - Method in class ij.process.FloatProcessor
  Not implemented.
autoThreshold() - Method in class ij.process.ImageProcessor
  Converts the image to binary using an automatically determined threshold.
average3dData(double[][]) - Static method in class skyview.util.Utilities
  Average a 2-D array over it's first dimension.
avg() - Method in class skyview.util.HistoMatcher

## B

B1950 - Static variable in class skyview.geometry.CoordinateSystem
  Standard B1950 coordinates
backup - Variable in class skyview.geometry.sampler.Combo
BackupMosaicker - Class in skyview.process
  This mosaicker is used to create a mosaic where if there are pixels unfilled by the primary survey one or more secondary surveys are invoked to fill them.
BackupMosaicker() - Constructor for class skyview.process.BackupMosaicker
Base64 - Class in heasarc.db.votable
  This class decodes a Base64 encoded string.
Base64() - Constructor for class heasarc.db.votable.Base64
baseCM - Variable in class ij.process.ImageProcessor
Batch - Class in skyview.executive
Batch() - Constructor for class skyview.executive.Batch
BatchCompatibility - Class in skyview.executive
  This class transforms setting to enable compatibility between the old SkyView batch interface and the current Java application.
BatchCompatibility() - Constructor for class skyview.executive.BatchCompatibility
before(String) - Method in class skyview.test.HCounter
  Is the current value before (or equal to) this input?
Besselian - Class in skyview.geometry.csys
  This class implements Besselian coordinate systems.
Besselian - Class in skyview.geometry.spheredistorter
  This class implements the distortion of Besselian coordinate systems.
Besselian() - Constructor for class skyview.geometry.spheredistorter.Besselian
Besselian(double) - Constructor for class skyview.geometry.csys.Besselian
  Get a CoordinateSystem of a given epoch.
Besselian.BesselianInverse - Class in skyview.geometry.spheredistorter
  This inner class defines the inverse distortion to the enclosing Besselian distorter.
BesselianInverse() - Constructor for class skyview.geometry.spheredistorter.Besselian.BesselianInverse
bestFit(int, boolean[]) - Method in class skyview.process.imagefinder.Checker
  Find the best image to use for a given unit vector.
bestFit(int, boolean[]) - Method in class skyview.sia.Checker
  Find the best image to use for a given unit vector.
BICUBIC - Static variable in class ij.process.ImageProcessor
  Interpolation methods
BILINEAR - Static variable in class ij.process.ImageProcessor
  Interpolation methods
bin(int) - Method in class ij.process.ImageProcessor
  Returns a copy of this image that has been reduced in size using binning.
bin0 - Variable in class skyview.executive.Imager
  The beginning of the first pixel in energy space.
BLACK - Static variable in class ij.process.ImageProcessor
  Value of pixels included in masks.
BLACK_AND_WHITE_LUT - Static variable in class ij.process.ImageProcessor
BLUR_MORE - Static variable in class ij.process.ImageProcessor
blurGaussian(double) - Method in class ij.process.ImageProcessor
  Blurs the image by convolving with a Gaussian function.
bLUT1 - Variable in class ij.process.ImageProcessor
bLUT2 - Variable in class ij.process.ImageProcessor
boldFont - Variable in class ij.process.ImageProcessor
Border - Class in skyview.process.imagefinder
  This class finds the best images to be used for sampling using using the criterion that the best candidate image is the one where the pixel is furthest from the edge.
Border() - Constructor for class skyview.process.imagefinder.Border
BoundaryAverage - Class in skyview.process.deedger
  This class adjusts the 0 point for data taken from multiple images to try to minize edge effects.
BoundaryAverage() - Constructor for class skyview.process.deedger.BoundaryAverage
BoundaryMedian - Class in skyview.process.deedger
  This class adjusts the 0 point for data taken from multiple images to try to minize edge effects.
BoundaryMedian() - Constructor for class skyview.process.deedger.BoundaryMedian
bounds - Variable in class skyview.geometry.Sampler
  This gives the minX,maxX, minY,maxY pixel values for the current output image.
BoxSmoother - Class in skyview.data
  Do a box car smoothing of an image
BoxSmoother() - Constructor for class skyview.data.BoxSmoother
Bypass - Class in skyview.process.imagefinder
  This class is a simple image finder which returns all images and a 0 length array.
Bypass() - Constructor for class skyview.process.imagefinder.Bypass

## C

c - Variable in class skyview.executive.Imager
  The CoordinateSystem object for the output image.
Cacher - Class in skyview.survey
  This class handles interactions with the file cache.
Cacher() - Constructor for class skyview.survey.Cacher
cacheRemoteURL(String, String) - Method in class skyview.survey.Cacher
  Read a URL into the cache and return the full path to the cached file.
CachingImageFactory - Class in skyview.survey
CachingImageFactory() - Constructor for class skyview.survey.CachingImageFactory
Cah - Class in skyview.geometry.projecter
  This class provides for the translation between coordinates and Cahill style Octahedron tangent plane projection.
Cah() - Constructor for class skyview.geometry.projecter.Cah
Cah.CahDeproj - Class in skyview.geometry.projecter
  Deproject from the plane back to the unit sphere
CahDeproj() - Constructor for class skyview.geometry.projecter.Cah.CahDeproj
calc() - Method in class skyview.util.HistoMatcher
cand - Variable in class skyview.executive.Imager
  The candidate images for use in resampling
Car - Class in skyview.geometry.projecter
  This class implements the Cartesian (rectangular) projection.
Car() - Constructor for class skyview.geometry.projecter.Car
Car.CarDeproj - Class in skyview.geometry.projecter
CarDeproj() - Constructor for class skyview.geometry.projecter.Car.CarDeproj
CatalogPostProcessor - Class in skyview.vo
  The CatalogPostProcessor is called to finish processing for catalog requests.
CatalogPostProcessor() - Constructor for class skyview.vo.CatalogPostProcessor
CatalogProcessor - Class in skyview.vo
CatalogProcessor() - Constructor for class skyview.vo.CatalogProcessor
CENTER_JUSTIFY - Static variable in class ij.process.ImageProcessor
  Center justify text.
centers - Variable in class skyview.process.imagefinder.Radius
CGI - Class in net.ivoa.util
  Simple utility for parsing CGI parameters
CGI() - Constructor for class net.ivoa.util.CGI
CGI(String) - Constructor for class net.ivoa.util.CGI
CGIInitiator - Class in skyview.request
  This class initiates a SkyView request from CGI.
CGIInitiator() - Constructor for class skyview.request.CGIInitiator
characters(char[], int, int) - Method in class skyview.request.XMLGallery
characters(char[], int, int) - Method in class skyview.survey.XMLSurvey.ImageFinderCallBack
check() - Method in class skyview.geometry.Converter
  See if there are any optimizations we can do.
Checker - Class in skyview.process.imagefinder
  This class sees if any pixels have coverage.
Checker - Class in skyview.sia
  This class sees if any pixels have coverage.
Checker() - Constructor for class skyview.process.imagefinder.Checker
Checker() - Constructor for class skyview.sia.Checker
checkInvalid(Pattern, String, String) - Method in class skyview.request.SkyViewDetainter
checkNaNs - Variable in class skyview.process.imagefinder.Checker
  Do we wish to check that the input image does not have a NaN value?
checkNaNs - Variable in class skyview.sia.Checker
  Do we wish to check that the input image does not have a NaN value?
checkUpdateSettings() - Method in class skyview.executive.Imager
checkURLEnd(String) - Static method in class skyview.vo.ConeQuerier
  Make sure that URLs can be appended to
clearData() - Method in class skyview.survey.DSSImage
  Clear the data array
clearData() - Method in class skyview.survey.FitsImage
clearData() - Method in class skyview.survey.Image
  Clear the data array
clearData() - Method in class skyview.survey.ProxyImage
  Clear the data array
clearData() - Method in class skyview.survey.Subset
  Clear the data array
clearImageCache() - Method in class skyview.executive.Imager
  Clear out state that may confuse subsequent processing
clearPlotStrings() - Method in class ij.process.ImageProcessor
clearRequests() - Static method in class skyview.vo.CatalogProcessor
  Empty the request hash
Clip - Class in skyview.geometry.sampler
  The class implements a fast flux conserving resampling based on the Sutherland-Hodgman clipping algorithm.
Clip() - Constructor for class skyview.geometry.sampler.Clip
clipRectPoly(double, double, double, double, double[], double[]) - Method in class skyview.geometry.sampler.Clip
  This method provides an interface to the simplified Sutherland-Hodges clipper for use outside the sampling context.
clipXMax - Variable in class ij.process.ImageProcessor
clipXMin - Variable in class ij.process.ImageProcessor
clipYMax - Variable in class ij.process.ImageProcessor
clipYMin - Variable in class ij.process.ImageProcessor
clone() - Method in class ij.process.ImageProcessor
  Returns a shallow copy of this ImageProcessor, where this image and the copy share pixel data.
clone() - Method in class skyview.geometry.Sampler
  Allow someone to get a copy of this sampler for use on another image.
close() - Method in class skyview.request.TextReplacer
cm - Variable in class ij.process.ImageProcessor
cm2 - Variable in class ij.process.ImageProcessor
combo - Variable in class skyview.geometry.sampler.Combo
Combo - Class in skyview.geometry.sampler
  This class uses two samplers.
Combo() - Constructor for class skyview.geometry.sampler.Combo
compare(String) - Method in class skyview.test.HCounter
  Does the given string come before or after the current value.
Component - Interface in skyview
ConeQuerier - Class in skyview.vo
  This class queries a cone search service and returns the positions and IDs.
ConeQuerier(String, String) - Constructor for class skyview.vo.ConeQuerier
  Build a cone querier using the full URL.
ConeQuerier(String, String, double, double, double) - Constructor for class skyview.vo.ConeQuerier
  Build a cone querier using the base URL and cone search parameters.
CONSUMED - Static variable in class skyview.process.imagefinder.Checker
CONSUMED - Static variable in class skyview.process.imagefinder.RectRecurse
CONSUMED - Static variable in class skyview.sia.Checker
contour() - Method in class skyview.data.Contourer
  Return a map of simple contours.
Contourer - Class in skyview.data
  Find contours of an image.
Contourer() - Constructor for class skyview.data.Contourer
Contourer.CSqrt - Class in skyview.data
Converter - Class in skyview.geometry
  A converter applies a succession of transformations on the data
Converter() - Constructor for class skyview.geometry.Converter
convertNotation(String) - Static method in class skyview.util.Utilities
  Handle exponential notation.
convertToByte(boolean) - Method in class ij.process.ImageProcessor
  Returns an 8-bit version of this image as a ByteProcessor.
convertToByteProcessor() - Method in class ij.process.ImageProcessor
  Returns an 8-bit version of this image as a ByteProcessor.
convertToByteProcessor(boolean) - Method in class ij.process.ImageProcessor
  Returns an 8-bit version of this image as a ByteProcessor.
convertToColorProcessor() - Method in class ij.process.ImageProcessor
  Returns an RGB version of this image as a ColorProcessor.
convertToCoords() - Method in class skyview.request.SourceCoordinates
  convert user input string to coords
convertToFloat() - Method in class ij.process.ImageProcessor
  Returns a 32-bit float version of this image as a FloatProcessor.
convertToFloatProcessor() - Method in class ij.process.ImageProcessor
  Returns a 32-bit float version of this image as a FloatProcessor.
convertToRGB() - Method in class ij.process.ImageProcessor
  Returns an RGB version of this image as a ColorProcessor.
convertToShort(boolean) - Method in class ij.process.ImageProcessor
  Returns a 16-bit version of this image as a ShortProcessor.
convertToShortProcessor() - Method in class ij.process.ImageProcessor
  Returns a 16-bit version of this image as a ShortProcessor.
convertToShortProcessor(boolean) - Method in class ij.process.ImageProcessor
  Returns a 16-bit version of this image as a ShortProcessor.
convexArea(int, double[], double[]) - Static method in class skyview.geometry.sampler.Clip
  Calculate the area of a convex polygon.
convolve(float[], int, int) - Method in class ij.process.FloatProcessor
  Performs a convolution operation using the specified kernel.
convolve(float[], int, int) - Method in class ij.process.ImageProcessor
  Performs a convolution operation using the specified kernel.
CONVOLVE - Static variable in class ij.process.ImageProcessor
convolve3x3(int[]) - Method in class ij.process.FloatProcessor
  Does 3x3 convolution.
convolve3x3(int[]) - Method in class ij.process.ImageProcessor
  Convolves the image or ROI with the specified 3x3 integer convolution kernel.
coord(double[]) - Static method in class skyview.geometry.Util
  Convert a unit vector to the corresponding coordinates.
coord(double[], double[]) - Static method in class skyview.geometry.Util
  Convert a unit vector to the corresponding coordinates.
coord(double, double, double) - Static method in class skyview.geometry.Util
CoordinateFormatter - Class in skyview.data
  This class provides methods to encode coordinates to a variety of precisions in both sexagesimal and decimal representations.
CoordinateFormatter() - Constructor for class skyview.data.CoordinateFormatter
CoordinateSystem - Class in skyview.geometry
  The class defines coordinate systems in terms of the operations needed to transform the standard coordinate system (currently J2000) to the coordinate system associated with the object.
CoordinateSystem() - Constructor for class skyview.geometry.CoordinateSystem
CoordsPixel - Class in skyview.util
  This class gives the coordinate values corresponding to a given pixel location in an image.
CoordsPixel() - Constructor for class skyview.util.CoordsPixel
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.FloatProcessor
  Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ImageProcessor
  Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyToHeader(Header) - Method in class skyview.geometry.WCS
cornerMatch(int[], boolean[], boolean[]) - Method in class skyview.process.imagefinder.Checker
  Check the corners of a rectangle.
cornerMatch(int[], boolean[], boolean[]) - Method in class skyview.process.imagefinder.RectRecurse
  Check the corners of a rectangle.
cornerMatch(int[], boolean[], boolean[]) - Method in class skyview.sia.Checker
  Check the corners of a rectangle.
cornersOnly - Variable in class skyview.process.imagefinder.Checker
  Do we want to only check on the corners of the rectangles and not the edges.
cornersOnly - Variable in class skyview.sia.Checker
  Do we want to only check on the corners of the rectangles and not the edges.
count(String) - Method in class net.ivoa.util.CGI
create8BitImage() - Method in class ij.process.FloatProcessor
createFitsFile() - Method in class skyview.executive.Imager
  Create the FITS file
createImage() - Method in class ij.process.FloatProcessor
  Create an 8-bit AWT image by scaling pixels in the range min-max to 0-255.
createImage() - Method in class ij.process.ImageProcessor
  Returns a copy of this image is the form of an AWT Image.
createImage(IndexColorModel) - Static method in class ij.plugin.LutLoader
  Creates a 256x32 image from an IndexColorModel.
createProcessor(int, int) - Method in class ij.process.FloatProcessor
  Returns a new, blank FloatProcessor with the specified width and height.
createProcessor(int, int) - Method in class ij.process.ImageProcessor
  Returns a new, blank processor with the specified width and height.
criterion(double, int) - Method in class skyview.process.imagefinder.Checker
criterion(double, int) - Method in class skyview.sia.Checker
criterion(int, int, int, double, double) - Method in class skyview.process.imagefinder.Border
  The criterion is the minimum distance to the edge of the image.
criterion(int, int, int, double, double) - Method in class skyview.process.imagefinder.MaxExposure
  The criterion for the best image
criterion(int, int, int, double, double) - Method in class skyview.process.imagefinder.Radius
  Being close to the center is the goal.
criterion(int, int, int, double, double) - Method in class skyview.process.imagefinder.RectRecurse
  The criterion function should return a larger value for more desirable inputs.
criterion(int, int, int, double, double) - Method in class skyview.process.imagefinder.ScaledBorder
  Given a point at x,y in an image of size a,b in the rectangle 0,a 0,b find the minimum distance to the edge.
crop() - Method in class ij.process.FloatProcessor
crop() - Method in class ij.process.ImageProcessor
  Creates a new processor containing an image that corresponds to the current ROI.
cross(double[], double[]) - Static method in class skyview.geometry.projecter.ToastPixelSize
Csc - Class in skyview.geometry.projecter
Csc() - Constructor for class skyview.geometry.projecter.Csc
Csc.CscDeproj - Class in skyview.geometry.projecter
CscDeproj() - Constructor for class skyview.geometry.projecter.Csc.CscDeproj
CSqrt() - Constructor for class skyview.data.Contourer.CSqrt
cTable - Variable in class ij.process.ImageProcessor
cubic(double) - Static method in class ij.process.ImageProcessor
cvtPixel(long) - Method in class skyview.geometry.projecter.Hpx
  This method converts a pixel number based on the assumption that we have a simple two-d image map, into the nested HEALPix pixel number.
cx - Variable in class ij.process.ImageProcessor
cy - Variable in class ij.process.ImageProcessor

## D

data - Variable in class skyview.survey.Image
  The data in the image.
dBin - Variable in class skyview.executive.Imager
  The width of pixels in energy space
debug(boolean) - Method in class skyview.geometry.Converter
decimal(double, int) - Method in class skyview.data.CoordinateFormatter
  Format a number with a specified precision.
decodeField(String) - Method in class net.ivoa.util.CGI
decompress() - Method in class skyview.survey.HDecompressor
  Decompress the input stream.
decompress(InputStream) - Static method in class skyview.survey.HDecompressor
  Hdecompress static method.
Deedger - Class in skyview.process
  Invoke the standard deedger.
Deedger() - Constructor for class skyview.process.Deedger
DEFAULT_QUALITY - Static variable in class ij.plugin.JpegWriter
defaultColorModel - Static variable in class ij.process.ImageProcessor
denorm(double[]) - Method in class skyview.geometry.projecter.Hpx
deproj(double[], double[]) - Static method in class skyview.geometry.projecter.Hpx
  Given an X-Y in the nominal HEALPix projection, return the unit vector on the sphere.
deproject(double, double) - Method in class skyview.geometry.projecter.Toa.ToaDeproj
  Deproject from the plane to the sky.
Deprojecter - Class in skyview.geometry
  This class deprojects a point from a projection plane onto the celestial sphere.
Deprojecter() - Constructor for class skyview.geometry.Deprojecter
DepthSampler - Class in skyview.geometry
  This class handles sampling in the depth dimension
DepthSampler(double, double, int) - Constructor for class skyview.geometry.DepthSampler
  Generate an output image with the appropriate pixelization
Detainter - Class in skyview.request
Detainter() - Constructor for class skyview.request.Detainter
DFT_CACHE - Static variable in class skyview.survey.CachingImageFactory
dilate() - Method in class ij.process.FloatProcessor
  Not implemented.
dilate() - Method in class ij.process.ImageProcessor
  Dilates the image or ROI using a 3x3 minimum filter.
DirScan - Class in skyview.ops
  This class is intended to be used to clean up directories which accumulate files during SkyView operations.
DirScan() - Constructor for class skyview.ops.DirScan
Distorter - Class in skyview.geometry
  This class defines a non-linear distortion in the image plane.
Distorter() - Constructor for class skyview.geometry.Distorter
doMetadata() - Method in class skyview.sia.SIA
doParse(SAXParser, DefaultHandler) - Method in class skyview.survey.XMLSurvey
  Run a parser
doProcess(String) - Method in class skyview.executive.Imager
doProcess(String, Boolean) - Method in class skyview.executive.Imager
doProcessSurvey(String, Survey) - Method in class skyview.executive.Imager
dot(double[], double[]) - Static method in class skyview.geometry.projecter.ToastPixelSize
down() - Method in class skyview.test.HCounter
  Add a new level to the counter hierarchy starting at 1.
down(int) - Method in class skyview.test.HCounter
  Add a new level to the counter hierarcy starting at a specified value.
draw(Roi) - Method in class ij.process.ImageProcessor
  Draws the specified ROI on this image using the line width and color defined by ip.setLineWidth() and ip.setColor().
draw(String[]) - Method in class skyview.ij.Drawer
drawDot(int, int) - Method in class ij.process.ImageProcessor
  Draws a dot using the current line width and fill/draw value.
drawDot2(int, int) - Method in class ij.process.ImageProcessor
  Deprecated.
Drawer - Class in skyview.ij
  Draw lines specified in a user file.
drawingColor - Variable in class ij.process.ImageProcessor
  Updated by TAM (original change to 138k, updated June 19,2014)
drawLine(int, int, int, int) - Method in class ij.process.ImageProcessor
  Draws a line from (x1,y1) to (x2,y2).
drawOval(int, int, int, int) - Method in class ij.process.ImageProcessor
  Draws an elliptical shape.
drawOverlay(Overlay) - Method in class ij.process.ImageProcessor
  Draws the specified Overlay on this image.
drawPixel(int, int) - Method in class ij.process.FloatProcessor
  Draws a pixel in the current foreground color.
drawPixel(int, int) - Method in class ij.process.ImageProcessor
  Sets the pixel at (x,y) to the current fill/draw value.
drawPolygon(Polygon) - Method in class ij.process.ImageProcessor
  Draws a polygon.
drawRect(int, int, int, int) - Method in class ij.process.ImageProcessor
  Draws a rectangle.
drawRoi(Roi) - Method in class ij.process.ImageProcessor
  Draws the specified ROI on this image using the stroke width, stroke color and fill color defined by roi.setStrokeWidth, roi.setStrokeColor() and roi.setFillColor().
drawString(String) - Method in class ij.process.ImageProcessor
  Draws a string at the current location using the current fill/draw value.
drawString(String, int, int) - Method in class ij.process.ImageProcessor
  Draws a string at the specified location using the current fill/draw value.
drawString(String, int, int, Color) - Method in class ij.process.ImageProcessor
  Draws a string at the specified location with a filled background.
drizzArea - Variable in class skyview.geometry.sampler.Clip
  Drizzle Area
drizzOffset - Variable in class skyview.geometry.sampler.Clip
  Drizzle offset
dsamp - Variable in class skyview.executive.Imager
  The energy sampler object used when creaing the output image.
DSS - Class in skyview.geometry.distorter
  The distortion object for a given DSS structure.
DSS(double, double, double, double, double, double[], double[], double[]) - Constructor for class skyview.geometry.distorter.DSS
DSS.DSSInv - Class in skyview.geometry.distorter
  This inner class is the inverse of the DSS Distorter and corrects the distortion generated there.
DSS2ImageGenerator - Class in skyview.survey
  This class generates DSS2 image spells.
DSS2ImageGenerator() - Constructor for class skyview.survey.DSS2ImageGenerator
DSSImage - Class in skyview.survey
  This class defines an image as the combination of a set of pixel values and a WCS describing the pixel coordinates.
DSSImage(String) - Constructor for class skyview.survey.DSSImage
  Construct a DSS image
DSSImageFactory - Class in skyview.survey
  A little class that creates FITS images using a factory method.
DSSImageFactory() - Constructor for class skyview.survey.DSSImageFactory
DSSInv() - Constructor for class skyview.geometry.distorter.DSS.DSSInv
dump() - Method in class skyview.survey.XMLSurveyFinder
  Create a cached translation between survey names and files.
dump(PrintStream) - Method in class skyview.geometry.Scaler
  Show the scaler.
dumpLines() - Method in class skyview.data.Gridder
  Display the lines
duplicate() - Method in class ij.process.FloatProcessor
  Returns a duplicate of this image.
duplicate() - Method in class ij.process.ImageProcessor
  Returns a duplicate of this image.
dynoProcess(String, Boolean) - Method in class skyview.executive.Imager
  Run a processor.

## E

Ecliptic - Class in skyview.geometry.csys
  An ecliptic coordinate system in a Julian frame.
Ecliptic(double) - Constructor for class skyview.geometry.csys.Ecliptic
  Get an Ecliptic Coordinate system at a given epoch.
Ecliptic(double, double) - Constructor for class skyview.geometry.csys.Ecliptic
  Get an Ecliptic coordinate system where the 0 of longitude can be reset.
edgeOff(int, int, int, int, boolean[]) - Method in class skyview.process.imagefinder.Checker
  Check whether all pixels on an edge of a rectangle all have the same best fit image.
edgeOff(int, int, int, int, boolean[]) - Method in class skyview.process.imagefinder.RectRecurse
  Check whether all pixels on an edge of a rectangle all have the same best fit image.
edgeOff(int, int, int, int, boolean[]) - Method in class skyview.sia.Checker
  Check whether all pixels on an edge of a rectangle all have the same best fit image.
endElement(String, String, String) - Method in class skyview.request.XMLGallery
endElement(String, String, String) - Method in class skyview.survey.XMLSurvey.ImageFinderCallBack
erode() - Method in class ij.process.FloatProcessor
  Not implemented.
erode() - Method in class ij.process.ImageProcessor
  Erodes the image or ROI using a 3x3 maximum filter.
error(String) - Static method in class skyview.request.XMLGallery
error(String) - Static method in class skyview.survey.XMLSurveyDescription
exp() - Method in class ij.process.FloatProcessor
exp() - Method in class ij.process.ImageProcessor
  Performs a exponential transform on the image or ROI.
expMatchStr - Variable in class skyview.process.expfinder.ExposureFile
ExposureFile - Class in skyview.process.expfinder
  Find the exposure in the FITS file.
ExposureFile() - Constructor for class skyview.process.expfinder.ExposureFile
ExposureFinder - Interface in skyview.process
  This interface should be implemented by objects that can calculate the exposure corresponding to a given pixel in an image.
expOutStr - Variable in class skyview.process.expfinder.ExposureFile

## F

factory(String) - Static method in class skyview.geometry.CoordinateSystem
  Get a coordinate system by name.
factory(String) - Static method in class skyview.geometry.Sampler
  Factory for creating samplers
factory(String) - Static method in class skyview.process.ImageFinder
  Create an ImageFinder given a class name or return an instance of the default class if no name is given.
factory(String) - Method in class skyview.survey.CachingImageFactory
factory(String) - Method in class skyview.survey.DSSImageFactory
factory(String) - Method in class skyview.survey.FitsImageFactory
factory(String) - Method in class skyview.survey.HealPixImageFactory
factory(String) - Method in class skyview.survey.HipsImageFactory
  Create a HiPS using the spell.
factory(String) - Method in interface skyview.survey.ImageFactory
  Create an image given the appropriate spell
factory(String, double, double, double) - Static method in class skyview.vo.ConeQuerier
  Create a ConeQuerier Object.
factory(String, String) - Static method in class skyview.geometry.CoordinateSystem
factory(String, String, double, String) - Static method in class skyview.request.SourceCoordinates
factory(String, String, String) - Static method in class skyview.request.SourceCoordinates
fill() - Method in class ij.process.FloatProcessor
  Fills the current rectangular ROI.
fill() - Method in class ij.process.ImageProcessor
  Fills the image or ROI bounding rectangle with the current fill/draw value.
fill(Roi) - Method in class ij.process.ImageProcessor
  Fills the ROI with the current fill/draw value.
fill(ImageProcessor) - Method in class ij.process.FloatProcessor
  Fills pixels that are within roi and part of the mask.
fill(ImageProcessor) - Method in class ij.process.ImageProcessor
  Fills pixels that are within the ROI bounding rectangle and part of the mask (i.e.
fillOutside(Roi) - Method in class ij.process.ImageProcessor
  Fills outside an Roi.
fillOval(int, int, int, int) - Method in class ij.process.ImageProcessor
  Fills an elliptical shape.
fillPolygon(Polygon) - Method in class ij.process.ImageProcessor
  Fills a polygon.
filter(int) - Method in class ij.process.FloatProcessor
  Filters using a 3x3 neighborhood.
filter(int) - Method in class ij.process.ImageProcessor
  A 3x3 filter operation, where the argument (BLUR_MORE, FIND_EDGES, MEDIAN_FILTER, MIN or MAX) determines the filter type.
find(double, double) - Method in class skyview.geometry.projecter.Toa
find(String) - Method in interface skyview.survey.SurveyFinder
  Do we have this survey?
find(String) - Method in class skyview.survey.XMLSurveyFinder
  Do we have this survey?
FIND_EDGES - Static variable in class ij.process.ImageProcessor
findEdges() - Method in class ij.process.ImageProcessor
  Finds edges in the image or ROI using a Sobel operator.
findFile(String) - Method in class skyview.survey.XMLSurveyFinder
  Find the survey file given the short name
findImages(Image[], Image) - Method in class skyview.process.imagefinder.Bypass
findImages(Image[], Image) - Method in class skyview.process.imagefinder.Checker
  Find the best image for each output pixel.
findImages(Image[], Image) - Method in class skyview.process.ImageFinder
  This is the basic method in the image finder.
findImages(Image[], Image) - Method in class skyview.process.imagefinder.LocalBorder
  Find the best image for each output pixel.
findImages(Image[], Image) - Method in class skyview.process.imagefinder.MaxExposure
  Find the appropriate images.
findImages(Image[], Image) - Method in class skyview.process.imagefinder.Overlap
  Find the images that it makes sense to sample.
findImages(Image[], Image) - Method in class skyview.process.imagefinder.RectRecurse
  Find the best image for each output pixel.
findImages(Image[], Image) - Method in class skyview.sia.Checker
  Find the best image for each output pixel.
findMinAndMax() - Method in class ij.process.FloatProcessor
  Calculates the minimum and maximum pixel value for the entire image.
firstCall - Variable in class skyview.process.imagefinder.Radius
FitsImage - Class in skyview.survey
  This class defines an image gotten by reading a file
FitsImage(String) - Constructor for class skyview.survey.FitsImage
FitsImageFactory - Class in skyview.survey
  A little class that creates FITS images using a factory method.
FitsImageFactory() - Constructor for class skyview.survey.FitsImageFactory
FitsKeyword - Class in skyview.process.expfinder
  Find the exposure in the FITS file.
FitsKeyword() - Constructor for class skyview.process.expfinder.FitsKeyword
fixedPoint(String) - Static method in class skyview.geometry.Projection
  This static method returns the location of the default projection center for fixed point projections.
flipHorizontal() - Method in class ij.process.ImageProcessor
  Flips the image or ROI horizontally.
flipVertical() - Method in class ij.process.FloatProcessor
flipVertical() - Method in class ij.process.ImageProcessor
  Flips the image or ROI vertically.
FloatProcessor - Class in ij.process
  This is an 32-bit floating-point image and methods that operate on that image.
FloatProcessor(float[][]) - Constructor for class ij.process.FloatProcessor
  Creates a FloatProcessor from a 2D float array using the default LUT.
FloatProcessor(int[][]) - Constructor for class ij.process.FloatProcessor
  Creates a FloatProcessor from a 2D int array.
FloatProcessor(int, int) - Constructor for class ij.process.FloatProcessor
  Creates a blank FloatProcessor using the default grayscale LUT that displays zero as black.
FloatProcessor(int, int, double[]) - Constructor for class ij.process.FloatProcessor
  Creates a FloatProcessor from a double array using the default grayscale LUT.
FloatProcessor(int, int, double[], double, double) - Constructor for class ij.process.FloatProcessor
  Added by TAM (originally added to 138k).
FloatProcessor(int, int, float[]) - Constructor for class ij.process.FloatProcessor
  Creates a new FloatProcessor using the specified pixel array.
FloatProcessor(int, int, float[], ColorModel) - Constructor for class ij.process.FloatProcessor
  Creates a new FloatProcessor using the specified pixel array and ColorModel.
FloatProcessor(int, int, int[]) - Constructor for class ij.process.FloatProcessor
  Creates a FloatProcessor from an int array using the default grayscale LUT.
fmImage - Variable in class ij.process.ImageProcessor
font - Variable in class ij.process.ImageProcessor
fontMetrics - Variable in class ij.process.ImageProcessor
format(double, int) - Method in class skyview.data.CoordinateFormatter
  Render a value using the current rules.
formatted(String, int, boolean) - Method in class skyview.geometry.Position
forwardTransform(double[], double[]) - Static method in class skyview.geometry.projecter.Ait
forwardTransform(double[], double[]) - Static method in class skyview.geometry.projecter.Mol
fromOut - Variable in class skyview.process.imagefinder.Checker
  The transformation from the output pixels to the celestial sphere
fromOut - Variable in class skyview.process.imagefinder.RectRecurse
  The transformation from the output pixels to the celestial sphere
fromOut - Variable in class skyview.sia.Checker
  The transformation from the output pixels to the celestial sphere
func(double) - Method in class skyview.data.Contourer.CSqrt

## G

Gal - Static variable in class skyview.geometry.CoordinateSystem
  Standard Galactic coordinates
Galactic - Class in skyview.geometry.csys
  The class defining Galactic coordinate system.
Galactic() - Constructor for class skyview.geometry.csys.Galactic
GalexExposure - Class in skyview.process.imagefinder
  This class extends the MaxExposure class to handle GALEX images where the center of the field is not necessarily the center of the exposed data.
GalexExposure() - Constructor for class skyview.process.imagefinder.GalexExposure
gamma(double) - Method in class ij.process.FloatProcessor
gamma(double) - Method in class ij.process.ImageProcessor
  Performs gamma correction of the image or ROI.
GaussSmoother - Class in skyview.data
GaussSmoother() - Constructor for class skyview.data.GaussSmoother
generateRGB() - Method in class skyview.ij.IJProcessor
get(int) - Method in class ij.process.FloatProcessor
get(int) - Method in class ij.process.ImageProcessor
get(int, int) - Method in class ij.process.FloatProcessor
get(int, int) - Method in class ij.process.ImageProcessor
  This is a faster version of getPixel() that does not do bounds checking.
get(String) - Static method in class skyview.executive.Settings
  Get a value corresponding to the key
get(String, String) - Static method in class skyview.executive.Settings
  Get a values corresponding to a key or the default
getAllSkyPixel(long) - Method in class skyview.survey.HipsImage
getArray(String) - Static method in class skyview.executive.Settings
  Get the values corresponding to a key as an array of strings.
getAsStream() - Method in class heasarc.db.votable.Base64
  Return an InputStream to the decoded data
getAutoThreshold() - Method in class ij.process.ImageProcessor
  Returns a pixel value (threshold) that can be used to divide the image into objects and background.
getAutoThreshold(int[]) - Method in class ij.process.ImageProcessor
  This is a version of getAutoThreshold() that uses a histogram passed as an argument.
getBackgroundValue() - Method in class ij.process.FloatProcessor
  Always returns 0.
getBackgroundValue() - Method in class ij.process.ImageProcessor
  Returns the background fill value.
getBaseImage() - Method in class skyview.survey.Image
  Get the base image if this is not the working image.
getBaseImage() - Method in class skyview.survey.ProxyImage
  Get the current 'real' image.
getBaseURL() - Method in class skyview.survey.NeatGenerator
  Find the base URL for the SIAP service and adjust as needed
getBaseURL() - Method in class skyview.survey.SIAPGenerator
  Find the base URL for this SIAP service
getBestIndex(Color) - Method in class ij.process.ImageProcessor
  Returns the LUT index that's the best match for this color.
getBicubicInterpolatedPixel(double, double, ImageProcessor) - Method in class ij.process.FloatProcessor
  This method is from Chapter 16 of "Digital Image Processing: An Algorithmic Introduction Using Java" by Burger and Burge (http://www.imagingbook.com/).
getBicubicInterpolatedPixel(double, double, ImageProcessor) - Method in class ij.process.ImageProcessor
  This method is from Chapter 16 of "Digital Image Processing: An Algorithmic Introduction Using Java" by Burger and Burge (http://www.imagingbook.com/).
getBitDepth() - Method in class ij.process.FloatProcessor
getBitDepth() - Method in class ij.process.ImageProcessor
  Returns the bit depth, 8, 16, 24 (RGB) or 32.
getBufferedImage() - Method in class ij.process.FloatProcessor
  Returns this image as an 8-bit BufferedImage.
getBufferedImage() - Method in class ij.process.ImageProcessor
  Returns this image as a BufferedImage.
getCachedFileName(String) - Method in class skyview.survey.Cacher
  See if there is a file in the cache that is of the approprite name.
getCachedFileName(String) - Static method in class skyview.survey.CachingImageFactory
getCalibrationTable() - Method in class ij.process.ImageProcessor
  Returns the calibration table or null.
getCandidate(int) - Method in class skyview.process.imagefinder.RectRecurse
  Return a particular candidate.
getCandidates() - Method in class skyview.executive.Imager
  Get the candidate images that may be used for resampling
getCatalogs() - Method in class skyview.vo.CatalogProcessor
getCelest(int) - Method in class skyview.process.imagefinder.Checker
  Get the celestial coordinates corresponding to a given pixel.
getCelest(int) - Method in class skyview.sia.Checker
  Get the celestial coordinates corresponding to a given pixel.
getCenter(int) - Method in class skyview.survey.Image
  Get the center position of the given output pixel
getCenter(int) - Method in class skyview.survey.ProxyImage
  Get the center position of the given output pixel
getCenters() - Method in class skyview.tile.TanTiler
getCenters() - Method in interface skyview.tile.Tiler
getColorModel() - Method in class ij.process.ImageProcessor
  Returns this processor's color model.
getColumn(int, int, int[], int) - Method in class ij.process.ImageProcessor
  Returns the pixel values down the column starting at (x,y).
getCoordinates() - Method in class skyview.geometry.Position
  Get the coordinates in the standard (J2000) frame.
getCoordinates(String) - Method in class skyview.geometry.Position
  Get the coordinates in a specified frame.
getCoordinateSystem() - Method in class skyview.geometry.WCS
  Get the CoordinateSystem used in the WCS
getCorners(int) - Method in class skyview.survey.Image
  Get the corners of the given output pixel
getCorners(int) - Method in class skyview.survey.ProxyImage
  Get the corners of the given output pixel
getCorners(long) - Method in class skyview.geometry.projecter.Hpx
  Get the scaled corners of a pixel in the nominal HEALPix projection
getCount() - Method in class skyview.vo.ConeQuerier
  Get the number of rows returned
getCurrentColorModel() - Method in class ij.process.ImageProcessor
  Returns the current color model, which may have been modified by setMinAndMax() or setThreshold().
getData(long) - Method in class skyview.survey.DSSImage
  Get a pixels data associated with the image.
getData(long) - Method in class skyview.survey.FitsImage
  Defer reading the data until it is asked for.
getData(long) - Method in class skyview.survey.HealPixImage
  Get a single element of data
getData(long) - Method in class skyview.survey.HipsImage
  Defer reading the data until it is asked for.
getData(long) - Method in class skyview.survey.Image
  Get a pixels data associated with the image.
getData(long) - Method in class skyview.survey.ProxyImage
  Get a pixels data associated with the image.
getData(long) - Method in class skyview.survey.Subset
  Get a pixels data associated with the image.
getData(String) - Method in class skyview.data.Contourer
  Get the data for the contourer
getDataArray() - Method in class skyview.survey.DSSImage
  Get the data as an array
getDataArray() - Method in class skyview.survey.FitsImage
getDataArray() - Method in class skyview.survey.HealPixImage
  Probably should happen, but just in case we support the get array function.
getDataArray() - Method in class skyview.survey.HipsImage
  Probably should happen, but just in case we support the get array function.
getDataArray() - Method in class skyview.survey.Image
  Get the data as an array
getDataArray() - Method in class skyview.survey.ProxyImage
  Get the data as an array
getDataArray() - Method in class skyview.survey.Subset
  Get the data as an array.
getDefaultColorModel() - Method in class ij.process.ImageProcessor
  Returns the default grayscale IndexColorModel.
getDepth() - Method in class skyview.survey.HealPixImage
  Only a scalar image.
getDepth() - Method in class skyview.survey.HipsImage
getDepth() - Method in class skyview.survey.Image
  Get the number of planes in the image
getDepth() - Method in class skyview.survey.ProxyImage
  Get the number of planes in the image
getDescription() - Method in interface skyview.Component
  Get the description of this component.
getDescription() - Method in class skyview.data.BoxSmoother
getDescription() - Method in class skyview.data.GaussSmoother
getDescription() - Method in class skyview.data.NormedGaussSmoother
getDescription() - Method in class skyview.data.PolarData
getDescription() - Method in class skyview.data.ThresholdMedianSmoother
  Indicate what processing is to be done.
getDescription() - Method in class skyview.geometry.Converter
getDescription() - Method in class skyview.geometry.csys.Besselian
getDescription() - Method in class skyview.geometry.csys.Ecliptic
  Get a description of this component.
getDescription() - Method in class skyview.geometry.csys.Galactic
  Get a description of the object.
getDescription() - Method in class skyview.geometry.csys.Helioecliptic
  Get a description of the component.
getDescription() - Method in class skyview.geometry.csys.ICRS
  Get a description of the object.
getDescription() - Method in class skyview.geometry.csys.Julian
  Get a description of the object.
getDescription() - Method in class skyview.geometry.DepthSampler
getDescription() - Method in class skyview.geometry.distorter.DSS.DSSInv
  Get a description of this component
getDescription() - Method in class skyview.geometry.distorter.DSS
getDescription() - Method in class skyview.geometry.Distorter
  What does this object do?
getDescription() - Method in class skyview.geometry.distorter.Neat
getDescription() - Method in class skyview.geometry.distorter.Neat.NeatInv
getDescription() - Method in class skyview.geometry.distorter.SIP
getDescription() - Method in class skyview.geometry.distorter.SIP.SIPinverse
getDescription() - Method in class skyview.geometry.projecter.Ait.AitDeproj
  Description of component
getDescription() - Method in class skyview.geometry.projecter.Ait
  A description of the component
getDescription() - Method in class skyview.geometry.projecter.Arc.ArcDeproj
  Get the description of the compontent
getDescription() - Method in class skyview.geometry.projecter.Arc
  Get a description for the component
getDescription() - Method in class skyview.geometry.projecter.Cah.CahDeproj
getDescription() - Method in class skyview.geometry.projecter.Cah
getDescription() - Method in class skyview.geometry.projecter.Car.CarDeproj
  Return a description of the component
getDescription() - Method in class skyview.geometry.projecter.Car
  Return a description of the component
getDescription() - Method in class skyview.geometry.projecter.Csc.CscDeproj
  Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.Csc
  Get a descrption of the component
getDescription() - Method in class skyview.geometry.projecter.Hpx
getDescription() - Method in class skyview.geometry.projecter.Hpx.HpxDeproj
getDescription() - Method in class skyview.geometry.projecter.Mer
  A description of the component
getDescription() - Method in class skyview.geometry.projecter.Mer.MerDeproj
  Description of component
getDescription() - Method in class skyview.geometry.projecter.Mol
  A description of the component
getDescription() - Method in class skyview.geometry.projecter.Mol.MolDeproj
  Description of component
getDescription() - Method in class skyview.geometry.projecter.Sfl
  Return a description of the component
getDescription() - Method in class skyview.geometry.projecter.Sfl.SflDeproj
  Return a description of the component
getDescription() - Method in class skyview.geometry.projecter.Sin
  Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.Sin.SinDeproj
  Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.Stg
  Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.Stg.StgDeproj
  Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.Tan
  Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.Tan.TanDeproj
  Get a description of the component
getDescription() - Method in class skyview.geometry.projecter.Tea
getDescription() - Method in class skyview.geometry.projecter.Tea.TeaDeproj
getDescription() - Method in class skyview.geometry.projecter.Toa
getDescription() - Method in class skyview.geometry.projecter.Toa.ToaDeproj
getDescription() - Method in class skyview.geometry.projecter.Tot
getDescription() - Method in class skyview.geometry.projecter.Tot.TotDeproj
getDescription() - Method in class skyview.geometry.projecter.Zea
  Get a description for the component
getDescription() - Method in class skyview.geometry.projecter.Zea.ZeaDeproj
  Get the description of the compontent
getDescription() - Method in class skyview.geometry.projecter.Zpn
  Get a description for the component
getDescription() - Method in class skyview.geometry.projecter.Zpn.ZpnDeproj
  Get the description of the compontent
getDescription() - Method in class skyview.geometry.Rotater
  Get a description of the component
getDescription() - Method in class skyview.geometry.sampler.Clip
getDescription() - Method in class skyview.geometry.sampler.Combo
getDescription() - Method in class skyview.geometry.sampler.Lanczos
getDescription() - Method in class skyview.geometry.sampler.LI
getDescription() - Method in class skyview.geometry.sampler.NN
getDescription() - Method in class skyview.geometry.sampler.Spline
getDescription() - Method in class skyview.geometry.Scaler
  What is a descrition for this component?
getDescription() - Method in class skyview.geometry.spheredistorter.Besselian.BesselianInverse
getDescription() - Method in class skyview.geometry.spheredistorter.Besselian
getDescription() - Method in class skyview.geometry.SphereDistorter
  What does this object do?
getDescription() - Method in class skyview.ij.IJProcessor
getDescription() - Method in class skyview.process.AddingMosaicker
  Get a description of this component
getDescription() - Method in class skyview.process.BackupMosaicker
  Get a description of this component
getDescription() - Method in class skyview.process.deedger.BoundaryAverage
  Get a description of this object
getDescription() - Method in class skyview.process.deedger.BoundaryMedian
  Get a description of this object
getDescription() - Method in class skyview.process.Deedger
getDescription() - Method in class skyview.process.deedger.ImageMedian
  Get a description of this object
getDescription() - Method in class skyview.process.IDMosaic
  Get a description of this component
getDescription() - Method in class skyview.process.imagefinder.Prefetcher
getDescription() - Method in class skyview.process.InfoPrint
  Get a description of this component
getDescription() - Method in class skyview.process.Mosaicker
  Get a description of this component
getDescription() - Method in class skyview.process.SubsetMosaicker
  Get a description of this component
getDescription() - Method in class skyview.request.HTMLWriter
  A description for the compontent.
getDescription() - Method in class skyview.request.RGBWriter
getDescription() - Method in class skyview.sia.SIAWriter
  Get a description of this component
getDescription() - Method in class skyview.survey.Image
  Get a description of the object
getDescription() - Method in class skyview.survey.Subset
  Get a description of the object
getDescription() - Method in class skyview.survey.UserSurvey
getDescription() - Method in class skyview.survey.XMLSurvey
  Get a description of the component
getDescription() - Method in class skyview.vo.CatalogPostProcessor
getDescription() - Method in class skyview.vo.CatalogProcessor
getDimensions() - Method in class skyview.tile.TanTiler
getDistorter() - Method in class skyview.geometry.Projection
  Get any distortion in the plane associated with this projection.
getDistorter() - Method in class skyview.geometry.WCS
  Get the plane distorter used in the projection (or null)
getEdgeAdjustments() - Method in class skyview.executive.Imager
  Get any adjustments made to image intensities to minimize edge effects.
getExposure(int) - Method in class skyview.process.expfinder.ExposureFile
getExposure(int) - Method in class skyview.process.expfinder.FitsKeyword
getExposure(int) - Method in class skyview.process.expfinder.Null
getExposure(int) - Method in interface skyview.process.ExposureFinder
  Get the exposure for a given pixel.
getExtraNames() - Method in class skyview.vo.ConeQuerier
  Get the names of extra columns
getExtras() - Method in class skyview.vo.ConeQuerier
  Get the list of extra columns
getf(int) - Method in class ij.process.FloatProcessor
getf(int) - Method in class ij.process.ImageProcessor
getf(int, int) - Method in class ij.process.FloatProcessor
getf(int, int) - Method in class ij.process.ImageProcessor
  Returns the value of the pixel at (x,y) as a float.
getField(String, String) - Method in class net.ivoa.util.CGI
getField(String, String) - Static method in class skyview.survey.XMLSurveyDescription
getFile(String, String) - Method in class skyview.survey.Cacher
getFilename() - Method in class skyview.survey.FitsImage
getFinderCallBack(Position, double, double, boolean) - Method in class skyview.survey.XMLSurvey
getFloatArray() - Method in class ij.process.ImageProcessor
  Returns a copy of the pixel data as a 2D float array with dimensions [x=0..width-1][y=0..height-1].
getFont() - Method in class ij.process.ImageProcessor
  Returns the current font.
getFontMetrics() - Method in class ij.process.ImageProcessor
  Returns the current FontMetrics.
getHeader() - Method in class skyview.survey.FitsImage
getHeaderNaxis() - Method in class skyview.geometry.WCS
getHealpixScale() - Method in class skyview.geometry.projecter.Hpx
  Get the size of the HEALPix pixels in the projection frame.
getHeight() - Method in class ij.process.ImageProcessor
  Returns the height of this image in pixels.
getHeight() - Method in class skyview.survey.HealPixImage
  Get the height of the image in pixels
getHeight() - Method in class skyview.survey.HipsImage
getHeight() - Method in class skyview.survey.Image
  Get the height of the image
getHeight() - Method in class skyview.survey.ProxyImage
  Get the height of the image
getHistogram() - Method in class ij.process.FloatProcessor
  Not implemented.
getHistogram() - Method in class ij.process.ImageProcessor
  Returns the histogram of the image or ROI.
getHistogramMax() - Method in class ij.process.ImageProcessor
  Returns the maximum histogram value used for histograms of float images.
getHistogramMin() - Method in class ij.process.ImageProcessor
  Returns the minimum histogram value used for histograms of float images.
getHistogramSize() - Method in class ij.process.ImageProcessor
  Returns the number of float image histogram bins.
getIDs() - Method in class skyview.vo.ConeQuerier
  Get the specified IDs
getImage() - Method in class skyview.survey.HDecompressor
  Get decompressed image as a one-d array of ints.
getImage(int) - Method in class skyview.tile.TanTiler
getImage(int) - Method in interface skyview.tile.Tiler
getImage(Image, double[]) - Method in class skyview.process.imagefinder.Checker
  Convert an input unit vector to a position in an image.
getImage(Image, double[]) - Method in class skyview.process.imagefinder.RectRecurse
  Convert an input unit vector to a position in an image.
getImage(Image, double[]) - Method in class skyview.process.imagefinder.RotatedRectangle
getImage(Image, double[]) - Method in class skyview.sia.Checker
  Convert an input unit vector to a position in an image.
getImageCount() - Method in class skyview.tile.TanTiler
getImageCount() - Method in interface skyview.tile.Tiler
getImageData() - Method in class skyview.executive.Imager
  Get the output data as 1-d double array
getImager() - Static method in class skyview.executive.Imager
  Get an Imager object -- normally the last one created.
getImages(double, double, double, ArrayList<String>) - Method in class skyview.survey.AkariGenerator
  It appears that the SIAP query for AKARI is assumed to request data in ecliptic coordinates.
getImages(double, double, double, ArrayList<String>) - Method in class skyview.survey.DSS2ImageGenerator
getImages(double, double, double, ArrayList<String>) - Method in class skyview.survey.HipsGenerator
  Get a HiPS request.
getImages(double, double, double, ArrayList<String>) - Method in interface skyview.survey.ImageGenerator
getImages(double, double, double, ArrayList<String>) - Method in class skyview.survey.SIAPGenerator
  Get images from a SIAP service
getImages(double, double, double, ArrayList<String>) - Method in class skyview.survey.TwoMASSGenerator
  Get images from a SIAP service
getImages(Position, double, double) - Method in interface skyview.survey.Survey
  Find a list of images that are within size of the given position.
getImages(Position, double, double) - Method in class skyview.survey.UserSurvey
getImages(Position, double, double) - Method in class skyview.survey.XMLSurvey
  Find candidate images from this survey.
getIndexSampleModel() - Method in class ij.process.ImageProcessor
getInputDimension() - Method in class skyview.geometry.Converter
  Get the dimensionality of the input vectors.
getInputDimension() - Method in class skyview.geometry.Deprojecter
  What is the input dimensionality of a deprojecter?
getInputDimension() - Method in class skyview.geometry.Distorter
  What is the input dimensionality of a Distorter?
getInputDimension() - Method in class skyview.geometry.Projecter
  What is the input dimensionality of a projecter?
getInputDimension() - Method in class skyview.geometry.Rotater
  Get the input dimension to a Rotater
getInputDimension() - Method in class skyview.geometry.Scaler
  What is the dimensionality of the input to a Scaler
getInputDimension() - Method in class skyview.geometry.SphereDistorter
  What is the input dimensionality of a Distorter?
getInputDimension() - Method in class skyview.geometry.Transformer
  Get the dimensionality of the input vectors.
getInputLimits(Image) - Method in class skyview.process.imagefinder.RectRecurse
getInputLimits(Image) - Method in class skyview.process.imagefinder.RotatedRectangle
getIntArray() - Method in class ij.process.ImageProcessor
  Returns a copy of the pixel data as a 2D int array with dimensions [x=0..width-1][y=0..height-1].
getInterleave() - Method in class skyview.geometry.projecter.Hpx
getInterpolate() - Method in class ij.process.ImageProcessor
  Returns the value of the interpolate field.
getInterpolatedPixel(double, double) - Method in class ij.process.FloatProcessor
  Uses the current interpolation method (BILINEAR or BICUBIC) to calculate the pixel value at real coordinates (x,y).
getInterpolatedPixel(double, double) - Method in class ij.process.ImageProcessor
  Uses the current interpolation method (bilinear or bicubic) to find the pixel value at real coordinates (x,y).
getInterpolatedValue(double, double) - Method in class ij.process.ImageProcessor
  Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getInterpolationMethod() - Method in class ij.process.ImageProcessor
  Returns the current interpolation method (NONE, BILINEAR or BICUBIC).
getInterpolationMethods() - Static method in class ij.process.ImageProcessor
getKeys() - Static method in class skyview.executive.Settings
  Return the array of keys in the current settings
getLabels() - Method in class skyview.data.Gridder
  Get the labels for the lines
getLastProcessor() - Static method in class skyview.vo.CatalogProcessor
getLat() - Method in class skyview.executive.Imager
  Get the central latitude/declination of the output image
getLine(double, double, double, double) - Method in class ij.process.ImageProcessor
  Returns an array containing the pixel values along the line starting at (x1,y1) and ending at (x2,y2).
getLines() - Method in class skyview.data.Gridder
  Get the line points
getLineWidth() - Method in class ij.process.ImageProcessor
  Returns the current line width.
getLon() - Method in class skyview.executive.Imager
  Get the central longitude/RA of the output image
getLut() - Method in class ij.process.ImageProcessor
getLutUpdateMode() - Method in class ij.process.ImageProcessor
  Returns the LUT update mode, which can be RED_LUT, BLACK_AND_WHITE_LUT, OVER_UNDER_LUT or NO_LUT_UPDATE.
getMask() - Method in class ij.process.ImageProcessor
  For images with irregular ROIs, returns a mask, otherwise, returns null.
getMaskArray() - Method in class ij.process.ImageProcessor
  Returns a reference to the mask pixel array, or null if there is no mask.
getMatrix() - Method in class skyview.geometry.Rotater
  Return the double coefficients for the matrix
getMax() - Method in class ij.process.FloatProcessor
  Returns the largest displayed pixel value.
getMax() - Method in class ij.process.ImageProcessor
  Returns the largest displayed pixel value.
getMaxOutput() - Method in class skyview.util.Scaler
getMaxThreshold() - Method in class ij.process.ImageProcessor
  Returns the upper threshold level.
getMaxVal() - Method in class skyview.util.Scaler
getMetadata() - Method in class skyview.survey.XMLSurvey
  Get the metadata for the survey
getMin() - Method in class ij.process.FloatProcessor
  Returns the smallest displayed pixel value.
getMin() - Method in class ij.process.ImageProcessor
  Returns the smallest displayed pixel value.
getMinOutput() - Method in class skyview.util.Scaler
getMinThreshold() - Method in class ij.process.ImageProcessor
  Returns the lower threshold level.
getMinVal() - Method in class skyview.util.Scaler
getName() - Method in interface skyview.Component
  Get the name of this component.
getName() - Method in class skyview.data.BoxSmoother
getName() - Method in class skyview.data.GaussSmoother
getName() - Method in class skyview.data.NormedGaussSmoother
getName() - Method in class skyview.data.PolarData
getName() - Method in class skyview.data.ThresholdMedianSmoother
getName() - Method in class skyview.geometry.Converter
getName() - Method in class skyview.geometry.csys.Besselian
getName() - Method in class skyview.geometry.csys.Ecliptic
  Get the name of this component.
getName() - Method in class skyview.geometry.csys.Galactic
  Get the name of this object.
getName() - Method in class skyview.geometry.csys.Helioecliptic
  Get the name of the component.
getName() - Method in class skyview.geometry.csys.ICRS
  Get the name of this object.
getName() - Method in class skyview.geometry.csys.Julian
  Get the name of this object.
getName() - Method in class skyview.geometry.DepthSampler
getName() - Method in class skyview.geometry.distorter.DSS.DSSInv
  Get the name of this component
getName() - Method in class skyview.geometry.distorter.DSS
  Get the name of this component
getName() - Method in class skyview.geometry.Distorter
  A name for this object
getName() - Method in class skyview.geometry.distorter.Neat
getName() - Method in class skyview.geometry.distorter.Neat.NeatInv
getName() - Method in class skyview.geometry.distorter.SIP
getName() - Method in class skyview.geometry.distorter.SIP.SIPinverse
getName() - Method in class skyview.geometry.projecter.Ait.AitDeproj
  Name of component
getName() - Method in class skyview.geometry.projecter.Ait
  The name of the Component
getName() - Method in class skyview.geometry.projecter.Arc.ArcDeproj
  Get the name of the component
getName() - Method in class skyview.geometry.projecter.Arc
  Get a name for the component
getName() - Method in class skyview.geometry.projecter.Cah.CahDeproj
getName() - Method in class skyview.geometry.projecter.Cah
getName() - Method in class skyview.geometry.projecter.Car.CarDeproj
  Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.Car
  Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.Csc.CscDeproj
  Get the name of the component
getName() - Method in class skyview.geometry.projecter.Csc
  Get the name of the component
getName() - Method in class skyview.geometry.projecter.Hpx
getName() - Method in class skyview.geometry.projecter.Hpx.HpxDeproj
getName() - Method in class skyview.geometry.projecter.Mer
  The name of the Component
getName() - Method in class skyview.geometry.projecter.Mer.MerDeproj
  Name of component
getName() - Method in class skyview.geometry.projecter.Mol
  The name of the Component
getName() - Method in class skyview.geometry.projecter.Mol.MolDeproj
  Name of component
getName() - Method in class skyview.geometry.projecter.Sfl
  Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.Sfl.SflDeproj
  Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.Sin
  Get the name of the component
getName() - Method in class skyview.geometry.projecter.Sin.SinDeproj
  Get the name of the component
getName() - Method in class skyview.geometry.projecter.Stg
  Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.Stg.StgDeproj
  Get the name of the component
getName() - Method in class skyview.geometry.projecter.Tan
  Get the name of the compontent
getName() - Method in class skyview.geometry.projecter.Tan.TanDeproj
  Get the name of the component
getName() - Method in class skyview.geometry.projecter.Tea
getName() - Method in class skyview.geometry.projecter.Tea.TeaDeproj
getName() - Method in class skyview.geometry.projecter.Toa
getName() - Method in class skyview.geometry.projecter.Toa.ToaDeproj
getName() - Method in class skyview.geometry.projecter.Tot
getName() - Method in class skyview.geometry.projecter.Tot.TotDeproj
getName() - Method in class skyview.geometry.projecter.Zea
  Get a name for the component
getName() - Method in class skyview.geometry.projecter.Zea.ZeaDeproj
  Get the name of the component
getName() - Method in class skyview.geometry.projecter.Zpn
  Get a name for the component
getName() - Method in class skyview.geometry.projecter.Zpn.ZpnDeproj
  Get the name of the component
getName() - Method in class skyview.geometry.Rotater
  Get the name of the component
getName() - Method in class skyview.geometry.sampler.Clip
getName() - Method in class skyview.geometry.sampler.Combo
getName() - Method in class skyview.geometry.sampler.Lanczos
getName() - Method in class skyview.geometry.sampler.LI
getName() - Method in class skyview.geometry.sampler.NN
getName() - Method in class skyview.geometry.sampler.Spline
getName() - Method in class skyview.geometry.Scaler
  What is a name for this component?
getName() - Method in class skyview.geometry.spheredistorter.Besselian.BesselianInverse
getName() - Method in class skyview.geometry.spheredistorter.Besselian
getName() - Method in class skyview.geometry.SphereDistorter
  A name for this object
getName() - Method in class skyview.ij.IJProcessor
getName() - Method in class skyview.process.AddingMosaicker
  Get the name of this component
getName() - Method in class skyview.process.BackupMosaicker
  Get the name of this component
getName() - Method in class skyview.process.deedger.BoundaryAverage
  Get a name for this object
getName() - Method in class skyview.process.deedger.BoundaryMedian
  Get a name for this object
getName() - Method in class skyview.process.Deedger
getName() - Method in class skyview.process.deedger.ImageMedian
  Get a name for this object
getName() - Method in class skyview.process.IDMosaic
  Get the name of this component
getName() - Method in class skyview.process.imagefinder.Prefetcher
getName() - Method in class skyview.process.InfoPrint
getName() - Method in class skyview.process.Mosaicker
  Get the name of this component
getName() - Method in class skyview.process.SubsetMosaicker
  Get the name of this component
getName() - Method in class skyview.request.HTMLWriter
  A name for the component
getName() - Method in class skyview.request.RGBWriter
getName() - Method in class skyview.sia.SIAWriter
getName() - Method in class skyview.survey.Image
  Get the name of the image
getName() - Method in class skyview.survey.ProxyImage
  Get the name of the image
getName() - Method in class skyview.survey.UserSurvey
getName() - Method in class skyview.survey.XMLSurvey
  Get the name of the compontent
getName() - Method in class skyview.vo.CatalogPostProcessor
getName() - Method in class skyview.vo.CatalogProcessor
getNChannels() - Method in class ij.process.ImageProcessor
  Returns the number of color channels in the image.
getNeighborhood(int, int, double[][]) - Method in class ij.process.ImageProcessor
  Experimental
getNSide() - Method in class skyview.geometry.projecter.Hpx
  Get the number of pixels on each side of one of the 12 main HEALPix tiles.
getNx() - Method in class skyview.survey.HDecompressor
  Get the X-dimension of the decompressed image.
getNy() - Method in class skyview.survey.HDecompressor
  Get the Y-dimension of the decompressed image.
getOblCorner(long) - Method in class skyview.geometry.projecter.Hpx
  Get the unscaled (i.e., unit tiles) lower left corner in the oblique projection
getObliquePixel(double, double) - Method in class skyview.geometry.projecter.Hpx
  Given the coordinates in the normalized oblique projection, find the pixel number.
getOffsetAngle(double[]) - Method in class skyview.geometry.csys.PositionAngleConverter
  Calculate the offset between the position angles in the two coordinate systems at the point defined by the input unit vector (presumed to be in the input coordinate system).
getOutputDimension() - Method in class skyview.geometry.Converter
  Get the dimensionality of the output vectors.
getOutputDimension() - Method in class skyview.geometry.Deprojecter
  What is the output dimensionality of a deprojecter?
getOutputDimension() - Method in class skyview.geometry.Distorter
  What is the output dimensionality of a Distorter?
getOutputDimension() - Method in class skyview.geometry.Projecter
  What is the output dimensionality of a projecter?
getOutputDimension() - Method in class skyview.geometry.Rotater
  Get the output dimension to a Rotater
getOutputDimension() - Method in class skyview.geometry.Scaler
  What is the dimensionality of the output of a Scaler
getOutputDimension() - Method in class skyview.geometry.SphereDistorter
  What is the output dimensionality of a Distorter?
getOutputDimension() - Method in class skyview.geometry.Transformer
  Get the dimensionality of the output vectors.
getOverlay() - Method in class ij.process.ImageProcessor
getParams() - Method in class net.ivoa.util.CGI
getParams() - Method in class skyview.geometry.projecter.Zpn
getParams() - Method in class skyview.geometry.projecter.Zpn.ZpnDeproj
getParams() - Method in class skyview.geometry.Scaler
getPattern(String) - Method in class skyview.request.Detainter
getPixel(double[]) - Method in class skyview.geometry.projecter.Hpx
  Find the pixel that includes the given position.
getPixel(int, int) - Method in class ij.process.FloatProcessor
  Returns a pixel value that must be converted using Float.intBitsToFloat().
getPixel(int, int) - Method in class ij.process.ImageProcessor
  Returns the value of the pixel at (x,y).
getPixel(int, int, int[]) - Method in class ij.process.FloatProcessor
  Returns the value of the pixel at (x,y) in a one element int array.
getPixel(int, int, int[]) - Method in class ij.process.ImageProcessor
  Returns the samples for the pixel at (x,y) in an int array.
getPixelCount() - Method in class ij.process.ImageProcessor
getPixelDepth() - Method in class skyview.executive.Imager
  Get the energy depth of the output image
getPixelHeight() - Method in class skyview.executive.Imager
  Get the height of the output image in pixels
getPixelInterpolated(double, double) - Method in class ij.process.FloatProcessor
getPixelInterpolated(double, double) - Method in class ij.process.ImageProcessor
  Uses the current interpolation method to find the pixel value at real coordinates (x,y).
getPixels() - Method in class ij.process.FloatProcessor
  Returns a reference to the float array containing this image's pixel data.
getPixels() - Method in class ij.process.ImageProcessor
  Returns a reference to this image's pixel array.
getPixels() - Method in class skyview.vo.CatalogProcessor
getPixelsCopy() - Method in class ij.process.FloatProcessor
  Returns a copy of the pixel data.
getPixelsCopy() - Method in class ij.process.ImageProcessor
  Returns a copy of the pixel data.
getPixelValue(int, int) - Method in class ij.process.FloatProcessor
  Returns the value of the pixel at (x,y) as a float.
getPixelValue(int, int) - Method in class ij.process.ImageProcessor
  Returns the value of the pixel at (x,y).
getPixelWidth() - Method in class skyview.executive.Imager
  Get the width of the output image in pixels
getPosition() - Method in class skyview.request.SourceCoordinates
  Get the position associated with these coordinates.
getPositions() - Method in class skyview.vo.ConeQuerier
  Get the array of position
getProjecter() - Method in class skyview.geometry.Projection
  Get the projection algorithm associated with this rotation.
getProjection() - Method in class skyview.geometry.WCS
  Get the projection used in the WCS
getQuality() - Static method in class ij.plugin.JpegWriter
  Deprecated.
  replaced by FileSaver.getJpegQuality()
getRange() - Method in class skyview.data.Contourer
getReferencePoint() - Method in class skyview.geometry.Projection
  Get the current reference position
getResourceOrFile(String) - Static method in class skyview.survey.Util
  Open a stream from a resource or a file.
getRoi() - Method in class ij.process.ImageProcessor
  Returns a Rectangle that represents the current region of interest.
getRotater() - Method in class skyview.geometry.CoordinateSystem
  Get the rotation associated with the projection.
getRotater() - Method in class skyview.geometry.csys.Besselian
getRotater() - Method in class skyview.geometry.csys.Ecliptic
getRotater() - Method in class skyview.geometry.csys.Galactic
  Return the rotation associated with the coordinate system.
getRotater() - Method in class skyview.geometry.csys.ICRS
  Return the rotation associated with the coordinate system.
getRotater() - Method in class skyview.geometry.csys.Julian
  Return the rotation associated with the coordinate system.
getRotater() - Method in class skyview.geometry.Projection
  Get the rotation that needs to be performed before the rotation.
getRow(int, int, float[], int) - Method in class ij.process.ImageProcessor
  Returns the pixel values along the horizontal line starting at (x,y).
getRow(int, int, int[], int) - Method in class ij.process.ImageProcessor
  Returns the pixel values along the horizontal line starting at (x,y).
getSamplerName() - Method in class skyview.executive.Imager
  Get the sampler name.
getSavedImages() - Static method in class skyview.ij.IJProcessor
getScale() - Method in class skyview.data.Gridder
getScale() - Method in class skyview.geometry.WCS
  Get the nominal scale of the WCS.
getScaler() - Method in class skyview.executive.Imager
  Get the Scaler used for the output image.
getScaler() - Method in class skyview.geometry.WCS
  Get the linear scaler used in the projection
getSIA() - Static method in class skyview.sia.SIA
getSize() - Method in class skyview.vo.ConeQuerier
  Get the size of the request
getSliceNumber() - Method in class ij.process.ImageProcessor
getSnapshotPixels() - Method in class ij.process.FloatProcessor
getSnapshotPixels() - Method in class ij.process.ImageProcessor
  Returns a reference to the snapshot (undo) buffer, or null.
getSpell() - Method in class skyview.survey.ProxyImage
  Get the spell associated with the proxy
getSphereDistorter() - Method in class skyview.geometry.CoordinateSystem
  Get the distortion associated with the projection.
getSphereDistorter() - Method in class skyview.geometry.csys.Besselian
getStatistics() - Method in class ij.process.ImageProcessor
getStatus() - Static method in class skyview.process.imagefinder.Checker
getStatus() - Static method in class skyview.sia.Checker
getStraddleStats() - Method in class skyview.geometry.projecter.HpxStraddle
  Get the statistics on the kind of straddles processed by this objects as an array of {north, south, edge}
getStreamColumn(String, String) - Method in class heasarc.db.votable.StreamToJava
getStringWidth(String) - Method in class ij.process.ImageProcessor
  Returns the width in pixels of the specified string.
getSum(double[]) - Static method in class skyview.executive.Imager
getSurvey() - Method in class skyview.executive.Imager
  Get the current survey being processed
getSurveyName() - Method in class skyview.survey.SIAPGenerator
getSurveyReader(String) - Static method in class skyview.survey.XMLSurvey
  Get a buffered reader associated with the survey given a string name.
getSurveys() - Method in interface skyview.survey.SurveyFinder
  What are the IDs available?
getSurveys() - Method in class skyview.survey.XMLSurveyFinder
  What surveys do we know about?
getSurveysFromMainifest() - Method in class skyview.survey.XMLSurveyFinder
  Get surveys from a user manifest.
getSurveysFromManifest() - Method in class skyview.survey.SurveyExtractor
  Get surveys from a user manifest.
getSurveysFromManifest(boolean) - Method in class skyview.survey.XMLSurveyFinder
getSurveysFromRoot() - Method in class skyview.survey.SurveyExtractor
  Get the surveys in the document root area
getSurveysFromRoot() - Method in class skyview.survey.XMLSurveyFinder
  Get the surveys in the document root area
getSurveysFromUser() - Method in class skyview.survey.SurveyExtractor
  Get user specified surveys
getSurveysFromUser() - Method in class skyview.survey.XMLSurveyFinder
  Get user specified surveys
getSurveySubdir() - Method in class skyview.survey.Cacher
  If we are divvying the cache by surveys, find the appropriate name for the current survey subdirectory.
getSurveySubdir() - Static method in class skyview.survey.CachingImageFactory
getSymbols() - Method in class skyview.vo.CatalogProcessor
getTransformer() - Method in class skyview.survey.Image
  Get the transformation to the pixel coordinates of the image
getTransformer() - Method in class skyview.survey.ProxyImage
  Get the transformation to the pixel coordinates of the image
getURL() - Method in class skyview.vo.ConeQuerier
  Get the URL used.
getURL(String, String) - Static method in class skyview.survey.Util
  Copy a URL to a local file
getUseDefault() - Method in class skyview.util.Scaler
getVersion() - Static method in class skyview.executive.Imager
getWCS() - Method in class skyview.survey.Image
  Get the WCS associated with the image.
getWCS() - Method in class skyview.survey.ProxyImage
  Get the WCS associated with the image.
getWidth() - Method in class ij.process.ImageProcessor
  Returns the width of this image in pixels.
getWidth() - Method in class skyview.survey.HealPixImage
  Get the width of the image in pixels
getWidth() - Method in class skyview.survey.HipsImage
getWidth() - Method in class skyview.survey.Image
  Get the width of the image
getWidth() - Method in class skyview.survey.ProxyImage
  Get the width of the image
getWriteCache() - Method in class skyview.survey.Cacher
  Find the name of the write cache directory and if necessary create it
getXTiling() - Method in class skyview.geometry.projecter.Car.CarDeproj
getXTiling() - Method in class skyview.geometry.projecter.Car
  Get tile offsets
getXTiling() - Method in class skyview.geometry.projecter.Csc
  This map can repeat in X.
getXTiling() - Method in class skyview.geometry.Projecter
  Some projections can tile the projection plane with repeated copies.
getYTiling() - Method in class skyview.geometry.projecter.Car.CarDeproj
getYTiling() - Method in class skyview.geometry.projecter.Car
  Get tile offsets
getYTiling() - Method in class skyview.geometry.Projecter
  The tiling period in Y
GifWriter - Class in ij.plugin
  Writes a stack as an animated Gif
GifWriter() - Constructor for class ij.plugin.GifWriter
gLUT1 - Variable in class ij.process.ImageProcessor
gLUT2 - Variable in class ij.process.ImageProcessor
grid() - Method in class skyview.data.Gridder
Gridder - Class in skyview.data
  This class is used to find the lines and text to draw coordinate grid overlays.
Gridder(Image, boolean) - Constructor for class skyview.data.Gridder
  Create a new Gridder object.
Gridder(Image, String) - Constructor for class skyview.data.Gridder
  Create a new Gridder object.
GridOffset - Class in skyview.geometry.projecter.toast
GridOffset() - Constructor for class skyview.geometry.projecter.toast.GridOffset

## H

has(String) - Static method in class skyview.executive.Settings
  Check if the given key has been set
haveImage(String, WCS) - Method in class skyview.executive.Imager
HCounter - Class in skyview.test
  This class defines a hierarchical counter that is may be used to index a hierarchy of objects (tests, version, ...).
HCounter() - Constructor for class skyview.test.HCounter
  Create a default counter
HCounter(int) - Constructor for class skyview.test.HCounter
  Create a counter starting at a specified integer
HCounter(int[]) - Constructor for class skyview.test.HCounter
  Create a counter starting at the specified location
HDecompressor - Class in skyview.survey
  HDecompressor.
HDecompressor() - Constructor for class skyview.survey.HDecompressor
  Create a bare decompressor object.
HDecompressor(InputStream) - Constructor for class skyview.survey.HDecompressor
  Create a decompressor associating it with a given input stream.
HealPixImage - Class in skyview.survey
  This class defines an image gotten by reading a HEALPix image where the pixels are in the nested pixel order.
HealPixImage(String) - Constructor for class skyview.survey.HealPixImage
HealPixImageFactory - Class in skyview.survey
  A little class that creates FITS images using a factory method.
HealPixImageFactory() - Constructor for class skyview.survey.HealPixImageFactory
HealPixSplitter - Class in skyview.survey
HealPixSplitter() - Constructor for class skyview.survey.HealPixSplitter
heasarc.db.votable - package heasarc.db.votable
heasarcResolve() - Method in class skyview.request.SourceCoordinates
  Set up and send query to resolve source name
height - Variable in class ij.process.ImageProcessor
Helioecliptic - Class in skyview.geometry.csys
  A helioecliptic coordinate system at a given epoch.
Helioecliptic(double) - Constructor for class skyview.geometry.csys.Helioecliptic
  Get a coordinate system at a given epoch.
hideProgress() - Method in class ij.process.ImageProcessor
  Deprecated.
HipsGenerator - Class in skyview.survey
  This class simply returns the directory in which a HiPS is stored.
HipsGenerator() - Constructor for class skyview.survey.HipsGenerator
HipsImage - Class in skyview.survey
  This class defines an image gotten by reading a HEALPix image where the pixels are in the nested pixel order.
HipsImage(String) - Constructor for class skyview.survey.HipsImage
  Create a image associated with a HiPS
HipsImageFactory - Class in skyview.survey
  A little class that creates a HiPS image from the spell provided.
HipsImageFactory() - Constructor for class skyview.survey.HipsImageFactory
histogramMax - Variable in class ij.process.ImageProcessor
histogramMin - Variable in class ij.process.ImageProcessor
histogramSize - Variable in class ij.process.ImageProcessor
HistoMatcher - Class in skyview.util
  Use this class to rescale a set of byte arrays to have the the same values at two points in the histogram of values.
HistoMatcher(double, double) - Constructor for class skyview.util.HistoMatcher
HistScaler - Class in skyview.util
  Scale an object linearly.
HistScaler() - Constructor for class skyview.util.HistScaler
  Provide default scaler that positive values will scale the array logarithmically between 0-255.
HistScaler(double, double, int, int) - Constructor for class skyview.util.HistScaler
  Provide a scaler with a specified scaling range to a specified range of bytes.
Hpx - Class in skyview.geometry.projecter
  The HEALPix project projects the sky into equal area pixels where the centers of the pixels are lined up on constant values of declination.
Hpx() - Constructor for class skyview.geometry.projecter.Hpx
  Default to the 512x512 squares
Hpx(int) - Constructor for class skyview.geometry.projecter.Hpx
Hpx.HpxDeproj - Class in skyview.geometry.projecter
HPXCvt - Class in skyview.survey
HPXCvt(long) - Constructor for class skyview.survey.HPXCvt
HpxDeproj() - Constructor for class skyview.geometry.projecter.Hpx.HpxDeproj
HpxStraddle - Class in skyview.geometry.projecter
  This class handles straddling in the Healpix projection.
HpxStraddle(Hpx) - Constructor for class skyview.geometry.projecter.HpxStraddle
  Create a straddler associated with the projection
HTMLWriter - Class in skyview.request
  This class writes the HTML output for SkyView web services
HTMLWriter() - Constructor for class skyview.request.HTMLWriter

## I

ICRS - Class in skyview.geometry.csys
  A class defining the ICRS coordinate system.
ICRS - Static variable in class skyview.geometry.CoordinateSystem
  Standard ICRS coordinates
ICRS() - Constructor for class skyview.geometry.csys.ICRS
IDMosaic - Class in skyview.process
  A mosaicker is an object which creates a new image from a set of input images.
IDMosaic() - Constructor for class skyview.process.IDMosaic
ifunc(double) - Method in class skyview.data.Contourer.CSqrt
ij.plugin - package ij.plugin
ij.process - package ij.process
IJProcessor - Class in skyview.ij
  This class uses ImageJ to create non-FITS image products.
IJProcessor() - Constructor for class skyview.ij.IJProcessor
image - Variable in class ij.process.ImageProcessor
Image - Class in skyview.survey
  This class defines an image as the combination of a set of pixel values and a WCS describing the pixel coordinates.
Image() - Constructor for class skyview.survey.Image
  Null constructor to be used in overriding classes
Image(double[], WCS, int, int) - Constructor for class skyview.survey.Image
  Construct an image given the data and WCS with default depth
Image(double[], WCS, int, int, int) - Constructor for class skyview.survey.Image
  Construct an image given the data and WCS with specified depth
ImageFactory - Interface in skyview.survey
  This interface is implemented by methods which can build an image using the given string.
ImageFinder - Class in skyview.process
ImageFinder() - Constructor for class skyview.process.ImageFinder
ImageGenerator - Interface in skyview.survey
  This interface is implemented by classes that dynamically generate a list of images (or more precisely the spells through which the images may be created by an ImageFactory).
ImageMedian - Class in skyview.process.deedger
  This class adjusts the 0 points for data taken from multiple images to try to minimize edge effects.
ImageMedian() - Constructor for class skyview.process.deedger.ImageMedian
ImageProcessor - Class in ij.process
  This abstract class is the superclass for classes that process the four data types (byte, short, float and RGB) supported by ImageJ.
ImageProcessor() - Constructor for class ij.process.ImageProcessor
Imager - Class in skyview.executive
  This class generates an image or images from user inputs.
Imager() - Constructor for class skyview.executive.Imager
  Initialize the imager.
imageUsed - Variable in class skyview.process.imagefinder.Checker
  Is a given image used in the transformation
imageUsed - Variable in class skyview.sia.Checker
  Is a given image used in the transformation
img - Variable in class ij.process.ImageProcessor
img - Variable in class skyview.process.imagefinder.Checker
  The index giving the best image for each pixel
img - Variable in class skyview.sia.Checker
  The index giving the best image for each pixel
ImgToRing(long, int) - Method in class skyview.geometry.projecter.Interleave
  Given the index in natural image order (y*nx+x), get the nested index.
increment() - Method in class skyview.test.HCounter
  Increment the deepest level of the counter
increment(int) - Method in class skyview.test.HCounter
  Increment a specific level of the counter.
inDepth - Variable in class skyview.geometry.Sampler
indices(long) - Method in class skyview.geometry.projecter.Interleave
  Separate interleaved pixels bits into the x and y values.
InfoPrint - Class in skyview.process
  Used with QueryFinder to print out whether there is any coverage in the region of the image.
InfoPrint() - Constructor for class skyview.process.InfoPrint
inHeight - Variable in class skyview.geometry.Sampler
inImage - Variable in class skyview.geometry.Sampler
  The input image.
init() - Method in class skyview.executive.Imager
initialize() - Method in class skyview.tile.TanTiler
initialize() - Method in interface skyview.tile.Tiler
initialize(double) - Method in class skyview.survey.HipsImage
initialize(double[], WCS, int, int, int) - Method in class skyview.survey.Image
  Initialize an image.
input - Variable in class skyview.process.imagefinder.Checker
  The input images.
input - Variable in class skyview.sia.Checker
  The input images.
insert(ImageProcessor, int, int) - Method in class ij.process.ImageProcessor
  Inserts the image contained in 'ip' at (xloc, yloc).
interchangeAxes() - Method in class skyview.geometry.Scaler
  Interchange the X and Y axes
Interleave - Class in skyview.geometry.projecter
  This class implements bit interleaving for two-d images.
Interleave() - Constructor for class skyview.geometry.projecter.Interleave
  Create a default interleaver with that can handle 512x512 images in a single iteration.
Interleave(int) - Constructor for class skyview.geometry.projecter.Interleave
  Create an interleaver with a specified buffer size for the array lookups.
interpolate - Variable in class ij.process.ImageProcessor
interpolatedValue(double, double) - Method in class skyview.geometry.sampler.Spline
interpolationMethod - Variable in class ij.process.ImageProcessor
inverse() - Method in class skyview.geometry.Converter
  Return the inverse of this series of transformations.
inverse() - Method in class skyview.geometry.distorter.DSS.DSSInv
  Get the inverse Distorter
inverse() - Method in class skyview.geometry.distorter.DSS
  The inverse Distorter (i.e., the undistorter) uses much of the same machinery, so we generate it as a inner class of the distorter.
inverse() - Method in class skyview.geometry.Distorter
inverse() - Method in class skyview.geometry.distorter.Neat
inverse() - Method in class skyview.geometry.distorter.Neat.NeatInv
inverse() - Method in class skyview.geometry.distorter.SIP
inverse() - Method in class skyview.geometry.distorter.SIP.SIPinverse
inverse() - Method in class skyview.geometry.projecter.Ait.AitDeproj
  Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.Ait
  Get the associated deprojecter
inverse() - Method in class skyview.geometry.projecter.Arc.ArcDeproj
  Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.Arc
  Get this inverse of the transformation
inverse() - Method in class skyview.geometry.projecter.Cah.CahDeproj
inverse() - Method in class skyview.geometry.projecter.Cah
inverse() - Method in class skyview.geometry.projecter.Car.CarDeproj
  Get the inverse
inverse() - Method in class skyview.geometry.projecter.Car
  Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.Csc.CscDeproj
inverse() - Method in class skyview.geometry.projecter.Csc
  Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.Hpx.HpxDeproj
inverse() - Method in class skyview.geometry.projecter.Hpx
inverse() - Method in class skyview.geometry.Projecter
  Get the inverse
inverse() - Method in class skyview.geometry.projecter.Mer
  Get the associated deprojecter
inverse() - Method in class skyview.geometry.projecter.Mer.MerDeproj
  Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.Mol
  Get the associated deprojecter
inverse() - Method in class skyview.geometry.projecter.Mol.MolDeproj
  Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.Sfl
  Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.Sfl.SflDeproj
  Get the inverse
inverse() - Method in class skyview.geometry.projecter.Sin
  Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.Sin.SinDeproj
  Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.Stg
  Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.Stg.StgDeproj
  Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.Tan
  Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.Tan.TanDeproj
  Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.Tea
inverse() - Method in class skyview.geometry.projecter.Tea.TeaDeproj
inverse() - Method in class skyview.geometry.projecter.Toa
inverse() - Method in class skyview.geometry.projecter.Toa.ToaDeproj
inverse() - Method in class skyview.geometry.projecter.Tot
inverse() - Method in class skyview.geometry.projecter.Tot.TotDeproj
inverse() - Method in class skyview.geometry.projecter.Zea
  Get this inverse of the transformation
inverse() - Method in class skyview.geometry.projecter.Zea.ZeaDeproj
  Get the inverse transformation
inverse() - Method in class skyview.geometry.projecter.Zpn
  Get the inverse of the transformation
inverse() - Method in class skyview.geometry.projecter.Zpn.ZpnDeproj
  Get the inverse transformation
inverse() - Method in class skyview.geometry.Rotater
  This isn't really right...
inverse() - Method in class skyview.geometry.Scaler
  Return the inverse transformation.
inverse() - Method in class skyview.geometry.spheredistorter.Besselian.BesselianInverse
inverse() - Method in class skyview.geometry.spheredistorter.Besselian
  Get the inverse distorter
inverse() - Method in class skyview.geometry.SphereDistorter
inverse() - Method in class skyview.geometry.Transformer
  Get the inverse of the transformation.
inversionTested - Variable in class ij.process.ImageProcessor
invert() - Method in class ij.process.FloatProcessor
invert() - Method in class ij.process.ImageProcessor
  Inverts the image or ROI.
invert() - Method in class skyview.geometry.distorter.DSS.DSSInv
  Get the forward distorter back
invertedLut - Variable in class ij.process.ImageProcessor
invertLut() - Method in class ij.process.ImageProcessor
  Inverts the values in this image's LUT (indexed color model).
inWidth - Variable in class skyview.geometry.Sampler
isBinary() - Method in class ij.process.ImageProcessor
  Returns 'true' if this is a binary image (8-bit-image with only 0 and 255).
isColorLut() - Method in class ij.process.ImageProcessor
  Returns true if this image uses a color LUT.
isDefaultLut() - Method in class ij.process.ImageProcessor
  Returns true if the image is using the default grayscale LUT.
isFixedProjection() - Method in class skyview.geometry.Projection
  Is this a fixed point projection?
isGrayscale() - Method in class ij.process.ImageProcessor
  Returns 'true' if this is an image with a grayscale LUT or an RGB image with identical red, green and blue channels.
isInverse(Transformer) - Method in class skyview.geometry.Converter
  Is this the inverse of another transformation.
isInverse(Transformer) - Method in class skyview.geometry.distorter.DSS.DSSInv
  Is this the inverse of another distorter?
isInverse(Transformer) - Method in class skyview.geometry.distorter.DSS
  Is this the inverse of another distorter?
isInverse(Transformer) - Method in class skyview.geometry.distorter.Neat
isInverse(Transformer) - Method in class skyview.geometry.distorter.Neat.NeatInv
isInverse(Transformer) - Method in class skyview.geometry.distorter.SIP
  Is another transformer the inverse of this one? True only if it was created as the inverse of this transformation.
isInverse(Transformer) - Method in class skyview.geometry.distorter.SIP.SIPinverse
isInverse(Transformer) - Method in class skyview.geometry.projecter.Ait.AitDeproj
  Is this the inverse of another transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Ait
  Is this the inverse of another transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Arc.ArcDeproj
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Arc
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Cah.CahDeproj
isInverse(Transformer) - Method in class skyview.geometry.projecter.Cah
isInverse(Transformer) - Method in class skyview.geometry.projecter.Car.CarDeproj
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Car
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Csc.CscDeproj
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Csc
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Hpx.HpxDeproj
isInverse(Transformer) - Method in class skyview.geometry.projecter.Hpx
isInverse(Transformer) - Method in class skyview.geometry.projecter.Mer
  Is this the inverse of another transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Mer.MerDeproj
  Is this the inverse of another transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Mol
  Is this the inverse of another transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Mol.MolDeproj
  Is this the inverse of another transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Sfl
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Sfl.SflDeproj
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Sin
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Sin.SinDeproj
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Stg
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Stg.StgDeproj
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Tan
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Tan.TanDeproj
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Tea
isInverse(Transformer) - Method in class skyview.geometry.projecter.Tea.TeaDeproj
isInverse(Transformer) - Method in class skyview.geometry.projecter.Toa
isInverse(Transformer) - Method in class skyview.geometry.projecter.Toa.ToaDeproj
isInverse(Transformer) - Method in class skyview.geometry.projecter.Tot
isInverse(Transformer) - Method in class skyview.geometry.projecter.Tot.TotDeproj
isInverse(Transformer) - Method in class skyview.geometry.projecter.Zea
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Zea.ZeaDeproj
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Zpn
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.projecter.Zpn.ZpnDeproj
  Is this an inverse of some other transformation?
isInverse(Transformer) - Method in class skyview.geometry.Rotater
  Is this the inverse rotation?
isInverse(Transformer) - Method in class skyview.geometry.Scaler
  Is this an inverse of the current scaler?
isInverse(Transformer) - Method in class skyview.geometry.spheredistorter.Besselian.BesselianInverse
  Is the the inverse of another transformation
isInverse(Transformer) - Method in class skyview.geometry.spheredistorter.Besselian
  Is the the inverse of another transformation
isInverse(Transformer) - Method in class skyview.geometry.Transformer
  Are these two transformations, inverses of each other? This method is used to optimize a series of transformations where transformations.
isInvertedLut() - Method in class ij.process.ImageProcessor
  Returns true if this image uses an inverting LUT that displays zero as white and 255 as black.
isKillable() - Method in class ij.process.ImageProcessor
  Deprecated.
ISODATA - Static variable in class ij.process.ImageProcessor
  Isodata thresholding method
ISODATA2 - Static variable in class ij.process.ImageProcessor
  Modified isodata method used in Image/Adjust/Threshold tool
isPseudoColorLut() - Method in class ij.process.ImageProcessor
  Returns true if this image uses a pseudocolor or grayscale LUT, in other words, is this an image that can be filtered.
isRotation() - Method in class skyview.geometry.csys.Besselian
  This coordinate system is not just a rotation away from the reference frame.
isTiled() - Method in class skyview.survey.DSSImage
  Is this image tiled
isTiled() - Method in class skyview.survey.Image
  Is this image tiled? I.e., do we read in only a piece of the image at a time?
isValid(Pattern, String, String) - Method in class skyview.request.SkyViewDetainter

## J

J2000 - Static variable in class skyview.geometry.CoordinateSystem
  Standard J2000 coordinates -- the reference frame
jacobian(double[]) - Method in class skyview.geometry.distorter.DSS.DSSInv
jacobian(double[]) - Method in class skyview.geometry.Distorter
  Get the local Jacobian for the distortion.
jacobian(double[]) - Method in class skyview.geometry.distorter.Neat.NeatInv
JpegWriter - Class in ij.plugin
  The File/Save As/Jpeg command (FileSaver.saveAsJpeg() method) uses this plugin to save images in JPEG format.
JpegWriter() - Constructor for class ij.plugin.JpegWriter
Julian - Class in skyview.geometry.csys
  The class defining Julian coordinate systems.
Julian(double) - Constructor for class skyview.geometry.csys.Julian
  Get a Julian CoordinateSystem of a given epoch.
justification - Variable in class ij.process.ImageProcessor

## K

keys() - Method in class net.ivoa.util.CGI

## L

Lanczos - Class in skyview.geometry.sampler
  This class implements a nearest neighbor sampling scheme.
Lanczos() - Constructor for class skyview.geometry.sampler.Lanczos
  Create a three lobe lanczos sampler as a default width.
lastX() - Method in class skyview.geometry.sampler.Clip
lastY() - Method in class skyview.geometry.sampler.Clip
lat - Variable in class skyview.executive.Imager
  The lon/lat (or RA/dec) coordinates of the output image.
LEFT_JUSTIFY - Static variable in class ij.process.ImageProcessor
  Left justify text.
levels() - Method in class skyview.test.HCounter
  How many levels in the hierarchy currently in the counter?
LI - Class in skyview.geometry.sampler
  This class implements a linear interpolation sampling scheme.
LI() - Constructor for class skyview.geometry.sampler.LI
LinearScaler - Class in skyview.util
  Scale an object linearly.
LinearScaler() - Constructor for class skyview.util.LinearScaler
LinearScaler(double, double, int, int) - Constructor for class skyview.util.LinearScaler
  Provide a scaler with a specified scaling range to a specified range of bytes.
lineTo(int, int) - Method in class ij.process.ImageProcessor
  Draws a line from the current drawing location to (x2,y2).
lineWidth - Variable in class ij.process.ImageProcessor
ln() - Method in class ij.process.ImageProcessor
  Does a natural logarithmic (base e) transform of the image or ROI.
loadCandidates(Position, Survey) - Method in class skyview.executive.Imager
loadImage() - Method in class skyview.executive.Imager
loadMatch(String) - Method in class skyview.executive.Imager
loadPosition() - Method in class skyview.executive.Imager
loadSamplers() - Method in class skyview.executive.Imager
loadSurvey(String) - Method in class skyview.executive.Imager
loadSurveyCacheFromFile(String) - Method in class skyview.survey.XMLSurveyFinder
loadSurveyCacheFromUrl(String) - Method in class skyview.survey.XMLSurveyFinder
loadWCS() - Method in class skyview.executive.Imager
LocalBorder - Class in skyview.process.imagefinder
LocalBorder() - Constructor for class skyview.process.imagefinder.LocalBorder
localCacheName() - Method in class skyview.survey.XMLSurveyFinder
  Get path to the local cache using the path to the jar file being executed.
log() - Method in class ij.process.FloatProcessor
log() - Method in class ij.process.ImageProcessor
  Does a natural logarithmic (base e) transform of the image or ROI.
log(String) - Static method in class skyview.sia.SIA
LogScaler - Class in skyview.util
  Scale an object linearly.
LogScaler() - Constructor for class skyview.util.LogScaler
  Provide default scaler that positive values will scale the array logarithmically between 0-255.
LogScaler(double, double, int, int, boolean) - Constructor for class skyview.util.LogScaler
  Provide a scaler with a specified scaling range to a specified range of bytes.
lon - Variable in class skyview.executive.Imager
  The lon/lat (or RA/dec) coordinates of the output image.
lutAnimation - Variable in class ij.process.ImageProcessor
LutLoader - Class in ij.plugin
  Opens NIH Image look-up tables (LUTs), 768 byte binary LUTs (256 reds, 256 greens and 256 blues), LUTs in text format, or generates the LUT specified by the string argument passed to the run() method.
LutLoader() - Constructor for class ij.plugin.LutLoader
lutUpdateMode - Variable in class ij.process.ImageProcessor

## M

main(String[]) - Static method in class heasarc.db.votable.Base64
main(String[]) - Static method in class skyview.data.AngScale
main(String[]) - Static method in class skyview.data.CoordinateFormatter
main(String[]) - Static method in class skyview.executive.Batch
  Run a series of image requests.
main(String[]) - Static method in class skyview.executive.Imager
  Generate an image given the input parameters.
main(String[]) - Static method in class skyview.geometry.csys.PositionAngleConverter
  Main program for testing.
main(String[]) - Static method in class skyview.geometry.distorter.SIP
main(String[]) - Static method in class skyview.geometry.Position
  Test the Position class
main(String[]) - Static method in class skyview.geometry.projecter.Ait
main(String[]) - Static method in class skyview.geometry.projecter.Cah
main(String[]) - Static method in class skyview.geometry.projecter.Hpx
main(String[]) - Static method in class skyview.geometry.projecter.Interleave
main(String[]) - Static method in class skyview.geometry.projecter.Mol
main(String[]) - Static method in class skyview.geometry.projecter.Tea
main(String[]) - Static method in class skyview.geometry.projecter.Toa
main(String[]) - Static method in class skyview.geometry.projecter.toast.GridOffset
main(String[]) - Static method in class skyview.geometry.projecter.toast.OctantLines
main(String[]) - Static method in class skyview.geometry.projecter.toast.ToaCalc
main(String[]) - Static method in class skyview.geometry.projecter.toast.ToaDeriv
main(String[]) - Static method in class skyview.geometry.projecter.toast.ToaGrid
main(String[]) - Static method in class skyview.geometry.projecter.toast.ToaLines
main(String[]) - Static method in class skyview.geometry.projecter.toast.ToaLines2
main(String[]) - Static method in class skyview.geometry.projecter.toast.ToaPixels
main(String[]) - Static method in class skyview.geometry.projecter.toast.ToaTriangle
main(String[]) - Static method in class skyview.geometry.projecter.ToastPixelSize
main(String[]) - Static method in class skyview.geometry.projecter.Tot
main(String[]) - Static method in class skyview.ops.DirScan
main(String[]) - Static method in class skyview.request.CGIInitiator
main(String[]) - Static method in class skyview.request.SettingsMatcher
main(String[]) - Static method in class skyview.request.SourceCoordinates
  Test functionality.
main(String[]) - Static method in class skyview.request.TextReplacer
  Usage: TextReplacer filename key=val [key=val] ...
main(String[]) - Static method in class skyview.request.XMLGallery
main(String[]) - Static method in class skyview.sia.SIA
main(String[]) - Static method in class skyview.survey.HealPixSplitter
main(String[]) - Static method in class skyview.survey.HPXCvt
main(String[]) - Static method in class skyview.survey.MocReader
main(String[]) - Static method in class skyview.survey.SurveyExtractor
main(String[]) - Static method in class skyview.survey.XMLSurveyDescription
main(String[]) - Static method in class skyview.survey.XMLSurveyFinder
  Main class.
main(String[]) - Static method in class skyview.test.HCounter
  Run some simple tests.
main(String[]) - Static method in class skyview.tile.TanTiler
main(String[]) - Static method in class skyview.tile.TileCenters
main(String[]) - Static method in class skyview.util.CoordsPixel
  Usage:
  java skyview.util.CoordsPixel file lon lat
  where file is the name of the FITS file and lon and lat are the celestial J2000 coordinates Note that the pixel coordinates for an NxM image run from 0 to N and 0 to M.
main(String[]) - Static method in class skyview.util.PixelCoords
  Usage:
  java skyview.util.PixelCoords file x y
  where file is the name of the FITS file and x and y are the pixel coordinates for which the celestial J2000 coordinates are desired.
main(String[]) - Static method in class skyview.vo.ConeQuerier
makeDefaultColorModel() - Method in class ij.process.ImageProcessor
manifestName() - Method in class skyview.survey.XMLSurveyFinder
manifestToHash() - Method in class skyview.survey.XMLSurveyFinder
  Read XML files to populate survey hash in memory.
maskSizeError(ImageProcessor) - Method in class ij.process.ImageProcessor
matchPoints() - Method in class skyview.util.HistoMatcher
max(double) - Method in class ij.process.FloatProcessor
max(double) - Method in class ij.process.ImageProcessor
  Pixels greater than 'value' are set to 'value'.
MAX - Static variable in class ij.process.ImageProcessor
MaxExposure - Class in skyview.process.imagefinder
  This class selects the best image for a pixel by looking for the image with the longest exposure that has the pixel in the field of view.
MaxExposure() - Constructor for class skyview.process.imagefinder.MaxExposure
maxInArray(double[]) - Static method in class skyview.util.Utilities
  Find the maximum value of a double array.
maxInArray(int[]) - Static method in class skyview.util.Utilities
  Find the maximum value in an integer array
maxThreshold - Variable in class ij.process.ImageProcessor
maxValue() - Method in class ij.process.FloatProcessor
  Returns the largest possible positive finite pixel value.
maxValue() - Method in class ij.process.ImageProcessor
  Returns the maximum possible pixel value.
MEDIAN_FILTER - Static variable in class ij.process.ImageProcessor
medianFilter() - Method in class ij.process.FloatProcessor
  Not implemented.
medianFilter() - Method in class ij.process.ImageProcessor
  A 3x3 median filter.
Mer - Class in skyview.geometry.projecter
  This class implements the Mercator projection
Mer() - Constructor for class skyview.geometry.projecter.Mer
Mer.MerDeproj - Class in skyview.geometry.projecter
MerDeproj() - Constructor for class skyview.geometry.projecter.Mer.MerDeproj
min(double) - Method in class ij.process.FloatProcessor
min(double) - Method in class ij.process.ImageProcessor
  Pixels less than 'value' are set to 'value'.
MIN - Static variable in class ij.process.ImageProcessor
minDist(double, double, double, double) - Method in class skyview.process.imagefinder.Checker
  Given a point at x,y in an image of size a,b in the rectangle 0,a 0,b find the minimum distance to the edge.
minDist(double, double, double, double) - Method in class skyview.process.imagefinder.RectRecurse
  Given a point at x,y in an image of size a,b in the rectangle 0,a 0,b find the minimum distance to the edge.
minDist(double, double, double, double) - Method in class skyview.sia.Checker
  Given a point at x,y in an image of size a,b in the rectangle 0,a 0,b find the minimum distance to the edge.
minInArray(double[]) - Static method in class skyview.util.Utilities
  Find the minimum value of an array.
minMaxInArray(double[]) - Static method in class skyview.util.Utilities
  The the extremum values in an array
minMaxSet - Variable in class ij.process.ImageProcessor
minThreshold - Variable in class ij.process.ImageProcessor
minValue() - Method in class ij.process.FloatProcessor
  Returns the smallest possible positive nonzero pixel value.
minValue() - Method in class ij.process.ImageProcessor
  Returns the minimum possible pixel value.
MocReader - Class in skyview.survey
  Read a MOC and support tests to see if pixels/tiles are available.
MocReader(String) - Constructor for class skyview.survey.MocReader
  Create a MocReader for a given file
Mol - Class in skyview.geometry.projecter
Mol() - Constructor for class skyview.geometry.projecter.Mol
Mol.MolDeproj - Class in skyview.geometry.projecter
MolDeproj() - Constructor for class skyview.geometry.projecter.Mol.MolDeproj
Mosaicker - Class in skyview.process
  A mosaicker is an object which creates a new image from a set of input images.
Mosaicker() - Constructor for class skyview.process.Mosaicker
moveTo(int, int) - Method in class ij.process.ImageProcessor
  Sets the current drawing location.
multiply(double) - Method in class ij.process.FloatProcessor
multiply(double) - Method in class ij.process.ImageProcessor
  Multiplies each pixel in the image or ROI by 'value'.

## N

NEAREST_NEIGHBOR - Static variable in class ij.process.ImageProcessor
  Interpolation methods
Neat - Class in skyview.geometry.distorter
  This class implements the NEAT radial distortion.
Neat(double, double, double) - Constructor for class skyview.geometry.distorter.Neat
Neat.NeatInv - Class in skyview.geometry.distorter
NeatGenerator - Class in skyview.survey
  This class gets a set of candidates from a SIAP request
NeatGenerator() - Constructor for class skyview.survey.NeatGenerator
NeatInv() - Constructor for class skyview.geometry.distorter.Neat.NeatInv
net.ivoa.util - package net.ivoa.util
newInstance(String, String) - Static method in class skyview.util.Utilities
  Create an object of a given class.
newPixels - Variable in class ij.process.ImageProcessor
NN - Class in skyview.geometry.sampler
  This class implements a nearest neighbor sampling
NN() - Constructor for class skyview.geometry.sampler.NN
NO_COVERAGE - Static variable in class skyview.process.imagefinder.Checker
NO_COVERAGE - Static variable in class skyview.process.imagefinder.RectRecurse
NO_COVERAGE - Static variable in class skyview.sia.Checker
NO_LUT_UPDATE - Static variable in class ij.process.ImageProcessor
NO_THRESHOLD - Static variable in class ij.process.ImageProcessor
  Value returned by getMinThreshold() when thresholding is not enabled.
noise(double) - Method in class ij.process.FloatProcessor
noise(double) - Method in class ij.process.ImageProcessor
  Adds pseudorandom, Gaussian ("normally") distributed values, with mean 0.0 and the specified standard deviation, to this image or ROI.
NON_PHYSICAL - Static variable in class skyview.process.imagefinder.Checker
NON_PHYSICAL - Static variable in class skyview.process.imagefinder.RectRecurse
NON_PHYSICAL - Static variable in class skyview.sia.Checker
NONE - Static variable in class ij.process.ImageProcessor
  Interpolation methods
norm(double[]) - Static method in class skyview.geometry.projecter.ToastPixelSize
normCoords(double[]) - Method in class skyview.geometry.projecter.Hpx
NormedGaussSmoother - Class in skyview.data
NormedGaussSmoother() - Constructor for class skyview.data.NormedGaussSmoother
normTile(double[]) - Method in class skyview.geometry.projecter.Hpx
  Return the tile number corresponding to the normalized coordinate location.
notifyFile() - Static method in class skyview.executive.Samp
Null - Class in skyview.process.expfinder
Null() - Constructor for class skyview.process.expfinder.Null

## O

OctantLines - Class in skyview.geometry.projecter.toast
OctantLines() - Constructor for class skyview.geometry.projecter.toast.OctantLines
open(InputStream) - Static method in class ij.plugin.LutLoader
  Opens an ImageJ LUT using an InputStream and returns it as an IndexColorModel.
open(String) - Static method in class ij.plugin.LutLoader
  Opens the specified ImageJ LUT and returns it as an IndexColorModel.
or(int) - Method in class ij.process.FloatProcessor
or(int) - Method in class ij.process.ImageProcessor
  Binary OR of each pixel in the image or ROI with 'value'.
ordinalSuffix(int) - Static method in class skyview.process.Mosaicker
  Find appropriate ordinal suffix for a given integer.
outDepth - Variable in class skyview.geometry.Sampler
outHeight - Variable in class skyview.geometry.Sampler
outImage - Variable in class skyview.geometry.Sampler
  The output image.
output - Variable in class skyview.executive.Imager
  The current output image
output - Variable in class skyview.process.imagefinder.Checker
  The output image
output - Variable in class skyview.sia.Checker
  The output image
outWidth - Variable in class skyview.geometry.Sampler
OVER_UNDER_LUT - Static variable in class ij.process.ImageProcessor
Overlap - Class in skyview.process.imagefinder
  This class is a simple image finder which returns all images that may have some overlap with the output image.
Overlap() - Constructor for class skyview.process.imagefinder.Overlap

## P

p - Variable in class skyview.executive.Imager
  The Projection object for the output image.
parse() - Method in class skyview.survey.MocReader
  Analyze the MOC to find out where the data for each order is found.
parseCoords() - Method in class skyview.request.SourceCoordinates
  extract coordinates that match coordinate system of user patch from query return
parseMultipartForm(String) - Method in class net.ivoa.util.CGI
parseParams() - Method in class net.ivoa.util.CGI
parseString(String) - Method in class net.ivoa.util.CGI
ParsingTermination - Exception Class in skyview.survey
  This class is used to terminate the parsing of of XML file (typically a survey description file).
ParsingTermination() - Constructor for exception class skyview.survey.ParsingTermination
pixel(int, int) - Method in class skyview.geometry.projecter.Interleave
PixelCoords - Class in skyview.util
  This class gives the coordinate values corresponding to a given pixel location in an image.
PixelCoords() - Constructor for class skyview.util.PixelCoords
pixelCount - Variable in class skyview.process.imagefinder.Checker
pixelCount - Variable in class skyview.sia.Checker
pixels(boolean) - Method in class skyview.vo.CatalogProcessor
  Transform the catalog positions into pixel positions.
pixels8 - Variable in class ij.process.FloatProcessor
plotStrings() - Method in class ij.process.ImageProcessor
pnt(String, double[]) - Static method in class skyview.geometry.projecter.ToastPixelSize
PolarData - Class in skyview.data
  Compute compound polarization parameters from the basic I,Q,U.
PolarData() - Constructor for class skyview.data.PolarData
pop() - Static method in class skyview.executive.Settings
  Give a copy of the current settings and pop the stack
Position - Class in skyview.geometry
  This class represents a position in the sky.
Position(double, double) - Constructor for class skyview.geometry.Position
  Define a position object in the standard (J2000) frame
Position(double, double, String) - Constructor for class skyview.geometry.Position
  Define a position object used a specified frame
PositionAngleConverter - Class in skyview.geometry.csys
  This class implements an algorithm that calculates the offsets between the position angle expressed with respect to the poles in two different coordinate systems.
PositionAngleConverter(CoordinateSystem, CoordinateSystem) - Constructor for class skyview.geometry.csys.PositionAngleConverter
postProcess(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.vo.CatalogProcessor
postprocessSurvey(Boolean) - Method in class skyview.executive.Imager
precession() - Method in class skyview.geometry.csys.Julian
  Get the Julian Precession Matrix for a given epoch (from J2000).
Prefetcher - Class in skyview.process.imagefinder
  This class makes sure that all of the candidate images are actually present and then if any candidate was not already in the cache is redoes the image finding using the standard image finder.
Prefetcher() - Constructor for class skyview.process.imagefinder.Prefetcher
prepareScaling(double[]) - Method in class skyview.util.HistScaler
prepareScaling(double[]) - Method in class skyview.util.LinearScaler
  Set up the scaling.
prepareScaling(double[]) - Method in class skyview.util.LogScaler
  Prepare to scale the data
prepareScaling(double[]) - Method in class skyview.util.Scaler
  Get ready for scaling in this particular instance.
prepareScaling(double[]) - Method in class skyview.util.SqrtScaler
  Prepare to scale the data
preserves() - Method in class skyview.geometry.distorter.DSS
primary - Variable in class skyview.geometry.sampler.Combo
printDescription(String) - Static method in class skyview.survey.XMLSurveyDescription
printElements() - Method in class skyview.geometry.Converter
printGallery(String) - Static method in class skyview.request.XMLGallery
printOut() - Method in class skyview.geometry.Rotater
  Debug output
printOut(int[], int) - Method in class skyview.process.imagefinder.RectRecurse
  Debugging output
printoutTemplate(String) - Method in class skyview.request.HTMLWriter
  Fill out the appropriate file template by reading the template and substituting in any variables with the current settings.
printSurvey(String) - Static method in class skyview.survey.XMLSurveyDescription
printTemplate(String) - Static method in class skyview.request.XMLGallery
printVert(int, double[], double[], String) - Static method in class skyview.geometry.sampler.Clip
  Debugging routine that prints a list of vertices.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.data.BoxSmoother
  Use as a postprocessor
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.data.PolarData
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.data.ThresholdMedianSmoother
  Do the median smoothing -- possibly with thresholding.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.data.WeightedSmoother
  Use as a postprocessor
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.ij.IJProcessor
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.process.AddingMosaicker
  Populate the pixel values of the output mosaic.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.process.BackupMosaicker
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.process.deedger.BoundaryAverage
  Initialized the de-edger.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.process.deedger.BoundaryMedian
  Initialize the de-edger.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.process.deedger.ImageMedian
  Initialized the de-edger.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.process.Deedger
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.process.IDMosaic
  Return the tiles that would be used as the mosaicked image.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.process.imagefinder.Prefetcher
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.process.InfoPrint
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.process.Mosaicker
  Populate the pixel values of the output mosaic.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.process.Processor
  Perform the processing task associated with this object.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.process.SubsetMosaicker
  Populate the pixel values of the output mosaic.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.request.HTMLWriter
  Process the image.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.request.RGBWriter
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.sia.SIAWriter
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.vo.CatalogPostProcessor
  Perform the processing task associated with this object.
process(Image[], Image, int[], Sampler, DepthSampler) - Method in class skyview.vo.CatalogProcessor
  Start up the processing.
Processor - Class in skyview.process
Processor() - Constructor for class skyview.process.Processor
processSurvey(String) - Method in class skyview.executive.Imager
  Process a particular survey.
proj(double[], double[]) - Static method in class skyview.geometry.projecter.Hpx
project(double, double) - Method in class skyview.geometry.projecter.Toa
  Calculate the x,y corresponding to a given lon/lat
Projecter - Class in skyview.geometry
  This class is the parent class for Transformers that project a point from the celestial sphere to a projection plane.
Projecter() - Constructor for class skyview.geometry.Projecter
Projection - Class in skyview.geometry
  This class implements projection algorithms to/from a projection plane and the unit sphere.
Projection(String) - Constructor for class skyview.geometry.Projection
  Get the correct projection
Projection(String, double[]) - Constructor for class skyview.geometry.Projection
  Create the specified projection.
ProxyImage - Class in skyview.survey
ProxyImage(String, WCS, int, int, int) - Constructor for class skyview.survey.ProxyImage
  Construct a WCS
push(HashMap<String, String>) - Static method in class skyview.executive.Settings
put(String, String) - Static method in class skyview.executive.Settings
  Save a key and value
putColumn(int, int, int[], int) - Method in class ij.process.ImageProcessor
  Inserts the pixels contained in 'data' into a column starting at (x,y).
putImage(Image) - Method in class skyview.data.Contourer
putPixel(int, int, int) - Method in class ij.process.FloatProcessor
  Stores the specified value at (x,y).
putPixel(int, int, int) - Method in class ij.process.ImageProcessor
  Stores the specified value at (x,y).
putPixel(int, int, int[]) - Method in class ij.process.FloatProcessor
  Sets a pixel in the image using a one element int array.
putPixel(int, int, int[]) - Method in class ij.process.ImageProcessor
  Sets a pixel in the image using an int array of samples.
putPixelValue(int, int, double) - Method in class ij.process.FloatProcessor
  Stores the specified real value at (x,y).
putPixelValue(int, int, double) - Method in class ij.process.ImageProcessor
  Stores the specified value at (x,y).
putRow(int, int, float[], int) - Method in class ij.process.ImageProcessor
  Inserts the pixels contained in 'data' into a horizontal line starting at (x,y).
putRow(int, int, int[], int) - Method in class ij.process.ImageProcessor
  Inserts the pixels contained in 'data' into a horizontal line starting at (x,y).

## Q

quickImgToRing(int) - Method in class skyview.geometry.projecter.Interleave
  This method can only be used if the dimension exactly matches the order for the Interleave.
quicklook() - Method in class skyview.sia.SIA
quickRingToImg(int) - Method in class skyview.geometry.projecter.Interleave
  This method can only be used if the Interleave order exactly matches the dimesion of the image.

## R

Radius - Class in skyview.process.imagefinder
  This class finds the best images to be used for sampling using a recursive rectangle algorithm.
Radius() - Constructor for class skyview.process.imagefinder.Radius
radiusSquared(double, double, double, double, int, Image) - Method in class skyview.process.imagefinder.GalexExposure
  Find the square of the offset from the center of the field of view.
radiusSquared(double, double, double, double, int, Image) - Method in class skyview.process.imagefinder.RectRecurse
  The default for this is to use the radius from the center of the image.
raster - Variable in class ij.process.ImageProcessor
read() - Method in class skyview.request.TextReplacer
read(char[]) - Method in class skyview.request.TextReplacer
read(char[], int, int) - Method in class skyview.request.TextReplacer
read(String) - Method in class skyview.survey.XMLSurveyFinder
readBoolean() - Method in class heasarc.db.votable.StreamToJava
readLine() - Method in class skyview.request.TextReplacer
readTable() - Method in class heasarc.db.votable.StreamToJava
  Parse the table into a list of lists.
ready() - Method in class skyview.request.TextReplacer
rectClip(int, double[], double[], double[], double[], double, double, double, double) - Method in class skyview.geometry.sampler.Clip
  Clip a polygon by a non-rotated rectangle.
rectCount - Variable in class skyview.process.imagefinder.Checker
rectCount - Variable in class skyview.sia.Checker
RectRecurse - Class in skyview.process.imagefinder
  This class finds the best images to be used for sampling using a recursive rectangle algorithm.
RectRecurse() - Constructor for class skyview.process.imagefinder.RectRecurse
recurse - Variable in class skyview.geometry.sampler.Clip
RED_LUT - Static variable in class ij.process.ImageProcessor
remoteCacheName() - Method in class skyview.survey.XMLSurveyFinder
replace(String) - Method in class skyview.request.TextReplacer
  Replace all settings variables with their values.
replace(String, String, String, boolean) - Static method in class skyview.survey.Util
replacePrefix(String, String[]) - Static method in class skyview.survey.Util
  Replace one prefix string with another.
replaceSettings(String) - Static method in class skyview.request.SettingsMatcher
  Replace all settings variables with their values.
reprocess(Image, int[], Sampler, DepthSampler, String) - Method in class skyview.process.BackupMosaicker
rescale(int) - Method in class skyview.util.HistoMatcher
rescale(int, double, double) - Method in class skyview.util.HistoMatcher
reset() - Method in class ij.process.FloatProcessor
reset() - Method in class ij.process.ImageProcessor
  Restores the pixel data from the snapshot (undo) buffer.
reset(ImageProcessor) - Method in class ij.process.FloatProcessor
reset(ImageProcessor) - Method in class ij.process.ImageProcessor
  Restores pixels from the snapshot buffer that are within the rectangular roi but not part of the mask.
resetBinaryThreshold() - Method in class ij.process.ImageProcessor
  Resets the threshold if minThreshold=maxThreshold and lutUpdateMode=NO_LUT_UPDATE.
resetMinAndMax() - Method in class ij.process.FloatProcessor
  Recalculates the min and max values used to scale pixel values to 0-255 for display.
resetMinAndMax() - Method in class ij.process.ImageProcessor
  For short and float images, recalculates the min and max image values needed to correctly display the image.
resetRoi() - Method in class ij.process.ImageProcessor
  Sets the ROI (Region of Interest) and clipping rectangle to the entire image.
resetThreshold() - Method in class ij.process.ImageProcessor
  Disables thresholding.
resize(int) - Method in class ij.process.ImageProcessor
  Creates a new ImageProcessor containing a scaled copy of this image or ROI, with the aspect ratio maintained.
resize(int, int) - Method in class ij.process.FloatProcessor
  Creates a new FloatProcessor containing a scaled copy of this image or selection.
resize(int, int) - Method in class ij.process.ImageProcessor
  Creates a new ImageProcessor containing a scaled copy of this image or ROI.
resize(int, int, boolean) - Method in class ij.process.ImageProcessor
  Creates a new ImageProcessor containing a scaled copy of this image or ROI.
resizeLinearly(int, int) - Method in class ij.process.ImageProcessor
  Use linear interpolation to resize images that have a width or height of one.
restore() - Static method in class skyview.executive.Settings
  Restore a previously saved state.
reuseMatch(String) - Method in class skyview.executive.Imager
reverseTransform(double[], double[]) - Static method in class skyview.geometry.projecter.Ait
reverseTransform(double[], double[]) - Static method in class skyview.geometry.projecter.Mol
RGBWriter - Class in skyview.request
RGBWriter() - Constructor for class skyview.request.RGBWriter
RIGHT_JUSTIFY - Static variable in class ij.process.ImageProcessor
  Right justify text.
ring2nest(long) - Method in class skyview.survey.HPXCvt
ringToImg(long, int) - Method in class skyview.geometry.projecter.Interleave
  Given an a pixel with an interleaved index.
rLUT1 - Variable in class ij.process.ImageProcessor
rLUT2 - Variable in class ij.process.ImageProcessor
roiHeight - Variable in class ij.process.ImageProcessor
roiWidth - Variable in class ij.process.ImageProcessor
roiX - Variable in class ij.process.ImageProcessor
roiY - Variable in class ij.process.ImageProcessor
rotate(double) - Method in class ij.process.FloatProcessor
  Rotates the image or ROI 'angle' degrees clockwise.
rotate(double) - Method in class ij.process.ImageProcessor
  Rotates the image or selection 'angle' degrees clockwise.
rotateAndScale(double[]) - Method in class skyview.geometry.projecter.Hpx
RotatedRectangle - Class in skyview.process.imagefinder
  This image finder uses the same algorithm as the border finder, but rather than using the rectangle in the projection plane, we assume that only a subrectangle which of the image (which may be rotated with respect to the image) is valid.
RotatedRectangle() - Constructor for class skyview.process.imagefinder.RotatedRectangle
rotateLeft() - Method in class ij.process.ImageProcessor
  Rotates the entire image 90 degrees counter-clockwise.
Rotater - Class in skyview.geometry
Rotater(double[][]) - Constructor for class skyview.geometry.Rotater
  Create a matrix from input data.
Rotater(String, double, double, double) - Constructor for class skyview.geometry.Rotater
  Form a rotation from the Euler angles - three successive rotations about specified Cartesian axes
rotateRight() - Method in class ij.process.ImageProcessor
  Rotates the entire image 90 degrees clockwise.
run() - Method in class skyview.executive.Imager
  Run the command
run() - Method in class skyview.request.SourceCoordinates
  send query to resolve user input
run() - Method in class skyview.sia.SIA
run() - Method in class skyview.vo.ConeQuerier
  Run the query
run(String) - Method in class ij.plugin.GifWriter
run(String) - Method in class ij.plugin.JpegWriter
run(String) - Method in class ij.plugin.LutLoader
  If 'arg'="", displays a file open dialog and opens the specified LUT.
run(String[]) - Method in class skyview.executive.Imager
  Run an image with a given set of arguments.
runThread() - Static method in class skyview.util.SetTimeout

## S

s - Variable in class skyview.executive.Imager
  The Scaler object for the output image.
samp - Variable in class skyview.executive.Imager
  The sampler object used to create the output image.
Samp - Class in skyview.executive
  This class implements the SAMP protocol for SkyView.
Samp() - Constructor for class skyview.executive.Samp
sample(int) - Method in class skyview.geometry.sampler.Clip
  Implement the sample function of the Sampler class.
sample(int) - Method in class skyview.geometry.sampler.Combo
  Use the primary unless we get a NaN
sample(int) - Method in class skyview.geometry.sampler.Lanczos
  Sample a single pixel
sample(int) - Method in class skyview.geometry.sampler.LI
  Sample at a specified pixel
sample(int) - Method in class skyview.geometry.sampler.NN
  Sample at a specified pixel
sample(int) - Method in class skyview.geometry.Sampler
  Find the value in the input data to put in the output data.
sample(int) - Method in class skyview.geometry.sampler.Spline
sample(Image) - Method in class skyview.geometry.DepthSampler
  Sample an image according the the input specification
sampleModel - Variable in class ij.process.ImageProcessor
samplePixel(int, double[], double[]) - Method in class skyview.geometry.sampler.Clip
  Sample a single map pixel.
Sampler - Class in skyview.geometry
Sampler() - Constructor for class skyview.geometry.Sampler
save() - Static method in class skyview.executive.Settings
  Save the current state of the settings for a later restoration
save(ImagePlus, String, int) - Static method in class ij.plugin.JpegWriter
  Thread-safe method.
scalarColumn(String) - Method in class heasarc.db.votable.StreamToJava
scale() - Method in class skyview.geometry.Scaler
  What is the scale of this transformation? This is defined as the ratio of the lengths between a unit transformation on input.
scale(double) - Method in class skyview.data.AngScale
  This function defines an appropriate interval between the grid values, given the absolute value of the range of the interval.
scale(double) - Method in class skyview.util.HistScaler
scale(double) - Method in class skyview.util.LinearScaler
  Scale a single value
scale(double) - Method in class skyview.util.LogScaler
  Scale an value.
scale(double) - Method in class skyview.util.Scaler
  Scale a single number.
scale(double) - Method in class skyview.util.SqrtScaler
  Scale an value.
scale(double, double) - Method in class ij.process.FloatProcessor
  Scales the image or selection using the specified scale factors.
scale(double, double) - Method in class ij.process.ImageProcessor
  Scales the image by the specified factors.
scale(int, double[], double[]) - Method in class skyview.util.HistoMatcher
scaleArray(Object) - Method in class skyview.util.Scaler
  Scale an array assumed to be a double array of arbitrary dimensionality.
ScaledBorder - Class in skyview.process.imagefinder
  This class works almost exactly like the BorderImageFinder, however when calculating the distance from the edge of the image, the distance is scaled to diagonal dimension of the image.
ScaledBorder() - Constructor for class skyview.process.imagefinder.ScaledBorder
Scaler - Class in skyview.geometry
  This class does 2-D scalings, rotations and linear transformations.
Scaler - Class in skyview.util
  Scale an object.
Scaler() - Constructor for class skyview.util.Scaler
  Provide default scaler.
Scaler(double, double, double, double, double, double) - Constructor for class skyview.geometry.Scaler
  Create a scaler where y0 = x0 + a00*x0 + a01*x1, y1 = x0+a10*x0+a11*x1.
Scaler(double, double, int, int) - Constructor for class skyview.util.Scaler
  Provide a scaler with a specified scaling range to a specified range of bytes.
scaling(double, double) - Method in class skyview.data.AngScale
  Get the desired starting values and scaling interval.
segmentStraddle(double[], double[]) - Method in class skyview.geometry.projecter.HpxStraddle
  Does the line between the two points straddle?
set() - Static method in class skyview.util.SetTimeout
set(double) - Method in class ij.process.FloatProcessor
set(double) - Method in class ij.process.ImageProcessor
  Assigns 'value' to each pixel in the image or ROI.
set(int, int) - Method in class ij.process.FloatProcessor
set(int, int) - Method in class ij.process.ImageProcessor
set(int, int, int) - Method in class ij.process.FloatProcessor
set(int, int, int) - Method in class ij.process.ImageProcessor
  This is a faster version of putPixel() that does not clip out of range values and does not do bounds checking.
set(long) - Method in class skyview.util.SetTimeout
setAccumulate(boolean) - Method in class skyview.survey.Image
  Set the accumulation mode.
setAntialiasedText(boolean) - Method in class ij.process.ImageProcessor
  Specifies whether or not text is drawn using antialiasing.
setAutoThreshold(int, int) - Method in class ij.process.ImageProcessor
  Automatically sets the lower and upper threshold levels, where 'method' must be ISODATA or ISODATA2 and 'lutUpdate' must be RED_LUT, BLACK_AND_WHITE_LUT, OVER_UNDER_LUT or NO_LUT_UPDATE.
setAutoThreshold(AutoThresholder.Method, boolean) - Method in class ij.process.ImageProcessor
setAutoThreshold(AutoThresholder.Method, boolean, int) - Method in class ij.process.ImageProcessor
setAutoThreshold(String) - Method in class ij.process.ImageProcessor
setAutoThreshold(String, boolean, int) - Method in class ij.process.ImageProcessor
setBackgroundValue(double) - Method in class ij.process.FloatProcessor
  Does nothing.
setBackgroundValue(double) - Method in class ij.process.ImageProcessor
  Sets the background fill value used by the rotate() and scale() methods.
setBinaryThreshold() - Method in class ij.process.ImageProcessor
setBounds(int[]) - Method in class skyview.geometry.sampler.Combo
  Set the bounds of the output image that may be asked for.
setBounds(int[]) - Method in class skyview.geometry.Sampler
  Set the bounds of the output image that may be asked for.
setCalibrationTable(float[]) - Method in class ij.process.ImageProcessor
  Set a lookup table used by getPixelValue(), getLine() and convertToFloat() to calibrate pixel values.
setClipRect(Rectangle) - Method in class ij.process.ImageProcessor
  Updates the clipping rectangle used by lineTo(), drawLine(), drawDot() and drawPixel().
setColor(double) - Method in class ij.process.ImageProcessor
  Sets the default fill/draw value.
setColor(int) - Method in class ij.process.ImageProcessor
  Sets the default fill/draw value.
setColor(Color) - Method in class ij.process.FloatProcessor
  Sets the foreground fill/draw color.
setColor(Color) - Method in class ij.process.ImageProcessor
  Sets the default fill/draw value to the pixel value closest to the specified color.
setColorModel(ColorModel) - Method in class ij.process.ImageProcessor
  Sets the color model.
setData(long, double) - Method in class skyview.survey.DSSImage
  Set the Data associated with the image.
setData(long, double) - Method in class skyview.survey.HealPixImage
  Support changing the data! Probably won't use this...
setData(long, double) - Method in class skyview.survey.HipsImage
  Support changing the data! Probably won't use this...
setData(long, double) - Method in class skyview.survey.Image
  Set the Data associated with the image.
setData(long, double) - Method in class skyview.survey.ProxyImage
  Set the Data associated with the image.
setData(long, double) - Method in class skyview.survey.Subset
  Set the data associated with the image.
setDataArray(double[]) - Method in class skyview.survey.DSSImage
  Set the data array
setDataArray(double[]) - Method in class skyview.survey.Image
  Set the data array
setDataArray(double[]) - Method in class skyview.survey.ProxyImage
  Set the data array
setDataArray(double[]) - Method in class skyview.survey.Subset
  Set the data array
setDistorter(Distorter) - Method in class skyview.geometry.Projection
setDrizzle(double) - Method in class skyview.geometry.sampler.Clip
  Set the drizzle factor for sampling
setEntriesUsed(int) - Method in class skyview.vo.ConeQuerier
setf(int, float) - Method in class ij.process.FloatProcessor
setf(int, float) - Method in class ij.process.ImageProcessor
setf(int, int, float) - Method in class ij.process.FloatProcessor
setf(int, int, float) - Method in class ij.process.ImageProcessor
  Sets the value of the pixel at (x,y) to 'value'.
setFactory(ImageFactory) - Method in class skyview.survey.ProxyImage
  Set the factory that is used to create the real images
setFloatArray(float[][]) - Method in class ij.process.ImageProcessor
  Replaces the pixel data with contents of the specified 2D float array.
setFont(Font) - Method in class ij.process.ImageProcessor
  Sets the font used by drawString().
setFunction(String) - Method in class skyview.data.Contourer
  Set the transformation to be done on the input image before finding contour regions.
setHeaderNaxis(int[]) - Method in class skyview.geometry.WCS
setHistogramRange(double, double) - Method in class ij.process.ImageProcessor
  Set the range used for histograms of float images.
setHistogramSize(int) - Method in class ij.process.ImageProcessor
  Set the number of bins to be used for histograms of float images.
setImage(Image) - Method in class skyview.data.Gridder
  Change the image
setImage(Image, Image, Sampler) - Method in class skyview.process.expfinder.ExposureFile
setImage(Image, Image, Sampler) - Method in class skyview.process.expfinder.FitsKeyword
setImage(Image, Image, Sampler) - Method in class skyview.process.expfinder.Null
setImage(Image, Image, Sampler) - Method in interface skyview.process.ExposureFinder
  Specify the input image for which we are going to get the exposure.
setInput(Image) - Method in class skyview.geometry.sampler.Clip
setInput(Image) - Method in class skyview.geometry.sampler.Combo
  Set the input image for the sampling
setInput(Image) - Method in class skyview.geometry.Sampler
  Set the input image for the sampling
setInput(Image) - Method in class skyview.geometry.sampler.Spline
  Construct a sample of a given degree.
setInputStream(InputStream) - Method in class skyview.survey.HDecompressor
  Set the input stream for an Hdecomp object.
setIntArray(int[][]) - Method in class ij.process.ImageProcessor
  Replaces the pixel data with contents of the specified 2D int array.
setIntensive(boolean) - Method in class skyview.geometry.sampler.Clip
setInterpolate(boolean) - Method in class ij.process.ImageProcessor
  This method has been replaced by setInterpolationMethod().
setInterpolationMethod(int) - Method in class ij.process.ImageProcessor
  Use this method to set the interpolation method (NONE, BILINEAR or BICUBIC) used by scale(), resize() and rotate().
setJustification(int) - Method in class ij.process.ImageProcessor
  Sets the justification used by drawString(), where `justification` is CENTER_JUSTIFY, RIGHT_JUSTIFY or LEFT_JUSTIFY.
setLimits(double, double, int) - Method in class skyview.data.Contourer
setLimits(double, double, int, double) - Method in class skyview.data.Contourer
  Set up the limits for the contouring.
setLineWidth(int) - Method in class ij.process.ImageProcessor
  Sets the line width used by lineTo() and drawDot().
setLut(LUT) - Method in class ij.process.ImageProcessor
setLutAnimation(boolean) - Method in class ij.process.ImageProcessor
  For 16 and 32 bit processors, set 'lutAnimation' true to have createImage() use the cached 8-bit version of the image.
setMask(ImageProcessor) - Method in class ij.process.ImageProcessor
  Defines a byte mask that limits processing to an irregular ROI.
setMaxVal(double) - Method in class skyview.util.Scaler
setMinAndMax(double, double) - Method in class ij.process.FloatProcessor
  Sets the min and max variables that control how real pixel values are mapped to 0-255 screen values.
setMinAndMax(double, double) - Method in class ij.process.ImageProcessor
  This image will be displayed by mapping pixel values in the range min-max to screen values in the range 0-255.
setMinMax(double[]) - Method in class skyview.util.HistScaler
setMinMax(double[]) - Method in class skyview.util.Scaler
setMinVal(double) - Method in class skyview.util.Scaler
setName(String) - Method in class skyview.survey.Image
  set the name of the image
setName(String) - Method in class skyview.survey.ProxyImage
  set the name of the image
setOrder(double) - Method in class skyview.survey.HipsImage
  Determine which order to sample at given the limits in the HiPS and the user requested scale.
setOrder(int) - Method in class skyview.geometry.projecter.Hpx
  Set up the base geometry of the HEALPix projection for the given order.
setOrder(int) - Method in class skyview.geometry.sampler.Lanczos
  Create a Lanczos sample of specified width sampler The data will be set later.
setOrder(int) - Method in class skyview.geometry.Sampler
  Set the order of the classifier.
setOrder(int) - Method in class skyview.geometry.sampler.Spline
  Set the order
setOutput(PrintStream) - Method in class skyview.vo.ConeQuerier
setOutput(Image) - Method in class skyview.geometry.sampler.Clip
setOutput(Image) - Method in class skyview.geometry.sampler.Combo
  Set the output image for the sampling
setOutput(Image) - Method in class skyview.geometry.Sampler
  Set the output image for the sampling
setOverColor(int, int, int) - Static method in class ij.process.ImageProcessor
  Sets the upper Over/Under threshold color.
setOverlay(Overlay) - Method in class ij.process.ImageProcessor
  This method is used to display virtual stack overlays.
setParams(double[]) - Method in class skyview.geometry.projecter.Zpn
setPixels(int, FloatProcessor) - Method in class ij.process.FloatProcessor
  Sets the pixels, and min&max values from a FloatProcessor.
setPixels(int, FloatProcessor) - Method in class ij.process.ImageProcessor
  Sets the pixels (of one color channel for RGB images) from a FloatProcessor.
setPixels(Object) - Method in class ij.process.FloatProcessor
setPixels(Object) - Method in class ij.process.ImageProcessor
  Sets a new pixel array for the image.
setPrecision(double, double) - Method in class skyview.geometry.projecter.Toa
  Specify precision used in non-grid project/deproject calculations
setPreferDSS(boolean) - Static method in class skyview.geometry.WCS
setProgressBar(ProgressBar) - Method in class ij.process.ImageProcessor
  Assigns a progress bar to this processor.
setQuality(int) - Static method in class ij.plugin.JpegWriter
  Deprecated.
  replaced by FileSaver.setJpegQuality()
setReference(double, double) - Method in class skyview.geometry.Projection
setRoi(int, int, int, int) - Method in class ij.process.ImageProcessor
  Defines a rectangular region of interest and sets the mask to null if this ROI is not the same size as the previous one.
setRoi(Roi) - Method in class ij.process.ImageProcessor
  Defines a non-rectangular region of interest that will consist of a rectangular ROI and a mask.
setRoi(Polygon) - Method in class ij.process.ImageProcessor
  Defines a polygonal region of interest that will consist of a rectangular ROI and a mask.
setRoi(Rectangle) - Method in class ij.process.ImageProcessor
  Defines a rectangular region of interest and sets the mask to null if this ROI is not the same size as the previous one.
setRotater(Rotater) - Method in class skyview.geometry.Projection
  Update the Rotater...
setSeparators(String[]) - Method in class skyview.data.CoordinateFormatter
  Specify the two separators to be used between the three numbers in sexagesimal output.
setSettings() - Method in class skyview.request.HTMLWriter
  This method writes out the settings so that JavaScript can use them.
setSexagesimal(boolean) - Method in class skyview.data.AngScale
  Do we want sexagesimal coordinates?
setSexagesimal(boolean) - Method in class skyview.data.CoordinateFormatter
setSexigesimal(boolean) - Method in class skyview.data.Gridder
  Set whether you want sexagesimal labels
setSliceNumber(int) - Method in class ij.process.ImageProcessor
  PlugInFilterRunner uses this method to set the slice number.
setSmoothSize(int, int) - Method in class skyview.data.WeightedSmoother
setSnapshotCopyMode(boolean) - Method in class ij.process.ImageProcessor
  The getPixelsCopy() method returns a reference to the snapshot buffer if it is not null and 'snapshotCopyMode' is true.
setSnapshotPixels(Object) - Method in class ij.process.FloatProcessor
setSnapshotPixels(Object) - Method in class ij.process.ImageProcessor
  Sets a new pixel array for the snapshot (undo) buffer.
setStrict(boolean) - Method in class skyview.process.imagefinder.Checker
  Set a strict geometry.
setStrict(boolean) - Method in class skyview.process.imagefinder.RectRecurse
  Set a strict geometry.
setStrict(boolean) - Method in class skyview.process.ImageFinder
  Do stricter tests of the best pixel match
setStrict(boolean) - Method in class skyview.sia.Checker
  Set a strict geometry.
setThreshold(double, double, int) - Method in class ij.process.FloatProcessor
setThreshold(double, double, int) - Method in class ij.process.ImageProcessor
  Sets the lower and upper threshold levels.
setTime(boolean) - Method in class skyview.data.AngScale
  Do we want coordinates in time?
SetTimeout - Class in skyview.util
  Used to force a process to timeout after a period of time
SetTimeout() - Constructor for class skyview.util.SetTimeout
Settings - Class in skyview.executive
  This class defines a singleton where SkyView preferences/settings Testchange...
SettingsFixer - Class in skyview.executive
  This class looks at the settings and updates as needed for use with the standard Java classes.
SettingsFixer() - Constructor for class skyview.executive.SettingsFixer
SettingsMatcher - Class in skyview.request
  This class provides a utility function that transforms strings to replace embedded settings with the current values of the setting.
SettingsMatcher() - Constructor for class skyview.request.SettingsMatcher
SettingsUpdater - Interface in skyview.executive
  This interface defines an object that would like to take process the settings before processing begins.
setTransform(Transformer) - Method in class skyview.geometry.sampler.Combo
  Set the transformation information.
setTransform(Transformer) - Method in class skyview.geometry.Sampler
  Set the transformation information.
setUnderColor(int, int, int) - Static method in class ij.process.ImageProcessor
  Set the lower Over/Under thresholding color.
setUseBicubic(boolean) - Static method in class ij.process.ImageProcessor
setUsedImages() - Method in class skyview.process.Mosaicker
setValue(double) - Method in class ij.process.FloatProcessor
  Sets the default fill/draw value.
setValue(double) - Method in class ij.process.ImageProcessor
  Sets the default fill/draw value.
setZeroFill(boolean) - Method in class skyview.data.CoordinateFormatter
sexagesimal(double, int) - Method in class skyview.data.CoordinateFormatter
  Create a sexagesimal string representing the coordinate value.
sexagesimal(double, int) - Static method in class skyview.util.Utilities
  Format a sexagesimal coordinate string.
Sfl - Class in skyview.geometry.projecter
  This class implements the Sanson-Flamsteed (Sinusoidal) projection.
Sfl() - Constructor for class skyview.geometry.projecter.Sfl
Sfl.SflDeproj - Class in skyview.geometry.projecter
SflDeproj() - Constructor for class skyview.geometry.projecter.Sfl.SflDeproj
shadowPoint(double, double) - Method in class skyview.geometry.projecter.Ait
  Find the shadow point for the given element.
shadowPoint(double, double) - Method in class skyview.geometry.projecter.Car
  Find the shadow to this point
shadowPoint(double, double) - Method in class skyview.geometry.projecter.Mer
  Find the shadow point for the given element.
shadowPoint(double, double) - Method in class skyview.geometry.Projecter
  Return a shadowpoint for the input location.
shadowPoint(double, double) - Method in class skyview.geometry.projecter.Toa
sharpen() - Method in class ij.process.ImageProcessor
  Sharpens the image or ROI using a 3x3 convolution kernel.
show() - Method in class skyview.survey.MocReader
  Describe basic characteristics of the MOC
show(String, double[]) - Static method in class skyview.geometry.projecter.Toa
showProgress(double) - Method in class ij.process.ImageProcessor
SIA - Class in skyview.sia
  This class initiates a SkyView SIA request.
SIA() - Constructor for class skyview.sia.SIA
SIAP2Generator - Class in skyview.survey
  This class gets a set of candidates from a SIAP request
SIAP2Generator() - Constructor for class skyview.survey.SIAP2Generator
SIAPGenerator - Class in skyview.survey
  This class gets a set of candidates from a SIAP request
SIAPGenerator() - Constructor for class skyview.survey.SIAPGenerator
SIAWriter - Class in skyview.sia
  This class writes out SIA records for surveys which have coverage in the specified region.
SIAWriter() - Constructor for class skyview.sia.SIAWriter
Sin - Class in skyview.geometry.projecter
Sin() - Constructor for class skyview.geometry.projecter.Sin
Sin.SinDeproj - Class in skyview.geometry.projecter
SinDeproj() - Constructor for class skyview.geometry.projecter.Sin.SinDeproj
SIP - Class in skyview.geometry.distorter
  Implement the SIP convention for distorting a standard projection.
SIP(double[][], double[][], double[][], double[][]) - Constructor for class skyview.geometry.distorter.SIP
  Explicitly set the coefficients for the distorter.
SIP(Header) - Constructor for class skyview.geometry.distorter.SIP
  Create a distorter from a FITS header.
SIP.SIPinverse - Class in skyview.geometry.distorter
  Create the inverse distorter for the main class here.
SIPinverse() - Constructor for class skyview.geometry.distorter.SIP.SIPinverse
skip(long) - Method in class skyview.request.TextReplacer
skyview - package skyview
skyview.data - package skyview.data
skyview.executive - package skyview.executive
skyview.geometry - package skyview.geometry
skyview.geometry.csys - package skyview.geometry.csys
skyview.geometry.distorter - package skyview.geometry.distorter
skyview.geometry.projecter - package skyview.geometry.projecter
skyview.geometry.projecter.toast - package skyview.geometry.projecter.toast
skyview.geometry.sampler - package skyview.geometry.sampler
skyview.geometry.spheredistorter - package skyview.geometry.spheredistorter
skyview.ij - package skyview.ij
skyview.ops - package skyview.ops
skyview.process - package skyview.process
skyview.process.deedger - package skyview.process.deedger
skyview.process.expfinder - package skyview.process.expfinder
skyview.process.imagefinder - package skyview.process.imagefinder
skyview.request - package skyview.request
skyview.sia - package skyview.sia
skyview.survey - package skyview.survey
skyview.test - package skyview.test
skyview.tile - package skyview.tile
skyview.util - package skyview.util
skyview.vo - package skyview.vo
SkyViewDetainter - Class in skyview.request
  This class defines string patterns and rules that are used to do taint checking for Skyview CGI calls.
SkyViewDetainter() - Constructor for class skyview.request.SkyViewDetainter
slurp(String) - Static method in class skyview.request.HTMLWriter
  Read a file into a big string.
SmartIntArray - Class in skyview.util
  this class allows you to build an array as you go.
SmartIntArray() - Constructor for class skyview.util.SmartIntArray
SmartIntArray(int) - Constructor for class skyview.util.SmartIntArray
SmartIntArray(int, int) - Constructor for class skyview.util.SmartIntArray
smooth() - Method in class ij.process.ImageProcessor
  Replaces each pixel with the 3x3 neighborhood mean.
smooth() - Method in class skyview.data.BoxSmoother
  Smooth the current image according to the prescribed size of the box.
smooth() - Method in class skyview.data.WeightedSmoother
  Smooth the current image according to the prescribed size of the box.
smooth(double[], int, int, int, int, int) - Static method in class skyview.data.BoxSmoother
smooth(Image, int, int) - Static method in class skyview.data.BoxSmoother
  Smooth an image directly
snapshot() - Method in class ij.process.FloatProcessor
snapshot() - Method in class ij.process.ImageProcessor
  Makes a copy of this image's pixel data that can be later restored using reset() or reset(mask).
snapshotHeight - Variable in class ij.process.ImageProcessor
snapshotWidth - Variable in class ij.process.ImageProcessor
source - Variable in class ij.process.ImageProcessor
SourceCoordinates - Class in skyview.request
  Converts user input to coordinates and returns a position object that can be used to get a position in any coordinate system.
SourceCoordinates(String, String, double, String) - Constructor for class skyview.request.SourceCoordinates
  Constructor
SourceCoordinates(String, String, String) - Constructor for class skyview.request.SourceCoordinates
specialReference() - Method in class skyview.geometry.Projection
sphdist(double, double, double, double) - Static method in class skyview.geometry.Util
  Distance between two points on a unit sphere.
sphdistDeg(double, double, double, double) - Static method in class skyview.geometry.Util
  Distance between two points on a unit sphere with angles in degres.
SphereDistorter - Class in skyview.geometry
  This class defines a non-linear distortion in the image plane.
SphereDistorter() - Constructor for class skyview.geometry.SphereDistorter
Spline - Class in skyview.geometry.sampler
Spline() - Constructor for class skyview.geometry.sampler.Spline
split(Image, int[], int, int) - Static method in class skyview.survey.Subset
  Split an index array into subarrays for each subset.
split(Image, int, int) - Static method in class skyview.survey.Subset
  Split an image into subsets.
SPLIT_X - Static variable in class skyview.process.imagefinder.Checker
SPLIT_X - Static variable in class skyview.process.imagefinder.RectRecurse
SPLIT_X - Static variable in class skyview.sia.Checker
SPLIT_XY - Static variable in class skyview.process.imagefinder.Checker
SPLIT_XY - Static variable in class skyview.process.imagefinder.RectRecurse
SPLIT_XY - Static variable in class skyview.sia.Checker
SPLIT_Y - Static variable in class skyview.process.imagefinder.Checker
SPLIT_Y - Static variable in class skyview.process.imagefinder.RectRecurse
SPLIT_Y - Static variable in class skyview.sia.Checker
sqr() - Method in class ij.process.FloatProcessor
sqr() - Method in class ij.process.ImageProcessor
  Performs a square transform on the image or ROI.
sqrt() - Method in class ij.process.FloatProcessor
sqrt() - Method in class ij.process.ImageProcessor
  Performs a square root transform on the image or ROI.
SqrtScaler - Class in skyview.util
  Scale an object linearly.
SqrtScaler() - Constructor for class skyview.util.SqrtScaler
  Provide default scaler that positive values will scale the array as the square root between 0-255.
SqrtScaler(double, double, int, int, boolean) - Constructor for class skyview.util.SqrtScaler
  Provide a scaler with a specified scaling range to a specified range of bytes.
standardWCS() - Method in class skyview.geometry.WCS
startElement(String, String, String, Attributes) - Method in class skyview.request.XMLGallery
startElement(String, String, String, Attributes) - Method in class skyview.survey.XMLSurvey.ImageFinderCallBack
Stg - Class in skyview.geometry.projecter
Stg() - Constructor for class skyview.geometry.projecter.Stg
Stg.StgDeproj - Class in skyview.geometry.projecter
StgDeproj() - Constructor for class skyview.geometry.projecter.Stg.StgDeproj
straddle(double[][]) - Method in class skyview.geometry.projecter.Ait
  Does this figure straddle the boundary.
straddle(double[][]) - Method in class skyview.geometry.projecter.Car
  Does this area appear to straddle the standard region?
straddle(double[][]) - Method in class skyview.geometry.projecter.Hpx
  Does this region specified by the points straddle?
straddle(double[][]) - Method in class skyview.geometry.projecter.HpxStraddle
  Does any segment in this sequence of points stadddle.
straddle(double[][]) - Method in class skyview.geometry.projecter.Mer
  Does this figure straddle the boundary.
straddle(double[][]) - Method in class skyview.geometry.Projecter
  Does this pixel go wrap around the standard region of the image? E.g., does it straddle the 180 deg in a Car or Ait projection?
straddle(double[][]) - Method in class skyview.geometry.projecter.Tea
straddle(double[][]) - Method in class skyview.geometry.projecter.Toa
straddleable() - Method in class skyview.geometry.projecter.Ait
straddleable() - Method in class skyview.geometry.projecter.Car
straddleable() - Method in class skyview.geometry.projecter.Hpx
  Can a region straddle in the projection -- and do we have code that can address this?
straddleable() - Method in class skyview.geometry.projecter.Mer
straddleable() - Method in class skyview.geometry.projecter.Mol
straddleable() - Method in class skyview.geometry.Projecter
  Is it possible for a pixel to straddle the valid region.
straddleable() - Method in class skyview.geometry.projecter.Tea
straddleable() - Method in class skyview.geometry.projecter.Toa
straddleComponents(double[][]) - Method in class skyview.geometry.projecter.Ait
  Get the straddle regions from a given set.
straddleComponents(double[][]) - Method in class skyview.geometry.projecter.Car
  Return a set of straddle points.
straddleComponents(double[][]) - Method in class skyview.geometry.projecter.Hpx
  Decompose a straddling region into multiple non-straddling regions.
straddleComponents(double[][]) - Method in class skyview.geometry.projecter.HpxStraddle
  Given figure which may straddle, return a set of figures which do not.
straddleComponents(double[][]) - Method in class skyview.geometry.projecter.Mer
  Get the straddle regions from a given set.
straddleComponents(double[][]) - Method in class skyview.geometry.Projecter
  If this is a straddling pixel, then return the straddle components
straddleComponents(double[][]) - Method in class skyview.geometry.projecter.Tea
straddleComponents(double[][]) - Method in class skyview.geometry.projecter.Toa
StreamToJava - Class in heasarc.db.votable
StreamToJava(InputStream) - Constructor for class heasarc.db.votable.StreamToJava
stringColumn(String) - Method in class heasarc.db.votable.StreamToJava
Subset - Class in skyview.survey
  A image that is a subset of an existing image.
Subset(Image, int, int, int, int) - Constructor for class skyview.survey.Subset
  Create a two-d subset of a (presumed) 2-d parent.
Subset(Image, int, int, int, int, int, int) - Constructor for class skyview.survey.Subset
  Create a subset of a parent image.
SubsetMosaicker - Class in skyview.process
  A mosaicker is an object which creates a new image from a set of input images.
SubsetMosaicker() - Constructor for class skyview.process.SubsetMosaicker
subtract(double) - Method in class ij.process.ImageProcessor
  Subtracts 'value' from each pixel in the image or ROI.
suggest(String, String) - Static method in class skyview.executive.Settings
  This method works like put except that it does not add a pair if the keys is in the _nullvalues setting or if the Setting is already set (unless it is set to the special value "default")
sunlong(double) - Static method in class skyview.geometry.csys.Helioecliptic
  Find the ecliptic longitude of the Sun at a given epoch.
surv - Variable in class skyview.executive.Imager
  The current Survey object being used.
Survey - Interface in skyview.survey
  methods for describing and manipulating survey data
SurveyException - Exception Class in skyview.survey
  This class is used for exceptions problems with the data in a survey.
SurveyException() - Constructor for exception class skyview.survey.SurveyException
SurveyException(String) - Constructor for exception class skyview.survey.SurveyException
SurveyException(String, Exception) - Constructor for exception class skyview.survey.SurveyException
SurveyExtractor - Class in skyview.survey
  This class provides functionality to translate survey names into associated survey description files.
SurveyExtractor() - Constructor for class skyview.survey.SurveyExtractor
  Set up the SurveyFinder and populate the map
SurveyFinder - Interface in skyview.survey
  This interface defines the role of something that can find a survey given a survey id.
SurveyLink() - Constructor for class skyview.survey.XMLSurveyFinder.SurveyLink
swapPixelArrays() - Method in class ij.process.FloatProcessor
  Swaps the pixel and snapshot (undo) arrays.
swapPixelArrays() - Method in class ij.process.ImageProcessor
  Swaps the pixel and snapshot (undo) buffers.

## T

t2 - Variable in class skyview.process.imagefinder.Checker
  Transformation temporaries
t2 - Variable in class skyview.sia.Checker
  Transformation temporaries
t3 - Variable in class skyview.process.imagefinder.Checker
t3 - Variable in class skyview.sia.Checker
Tan - Class in skyview.geometry.projecter
Tan() - Constructor for class skyview.geometry.projecter.Tan
Tan.TanDeproj - Class in skyview.geometry.projecter
TanDeproj() - Constructor for class skyview.geometry.projecter.Tan.TanDeproj
TanTiler - Class in skyview.tile
TanTiler() - Constructor for class skyview.tile.TanTiler
Tea - Class in skyview.geometry.projecter
  This class provides for the translation between coordinates and the TEA Equal Area projection.
Tea() - Constructor for class skyview.geometry.projecter.Tea
Tea.TeaDeproj - Class in skyview.geometry.projecter
  Deproject from the plane back to the unit sphere
TeaDeproj() - Constructor for class skyview.geometry.projecter.Tea.TeaDeproj
test(int, long) - Method in class skyview.survey.MocReader
  See if there is any overlap between the requested pixel and the data as indicated in the MOC.
TextReplacer - Class in skyview.request
  This class provides a utility function that transforms strings to replace embedded settings with the current values of the setting.
TextReplacer(Map<String, String>, Reader) - Constructor for class skyview.request.TextReplacer
  Create an object where we'll filter an input stream replacing variables with values.
threshold(int) - Method in class ij.process.FloatProcessor
  Not implemented.
threshold(int) - Method in class ij.process.ImageProcessor
  Sets pixels less than or equal to level to 0 and all other pixels to 255.
ThresholdMedianSmoother - Class in skyview.data
  Do a median smoothing for all pixels that differ from the median by more then the threshold Settings used: MedianSmoother=size[,threshold] Size gives the size of the box in which the median is computed This must be an odd integer >= 3 Threshold is the change beyond which the pixel will be smoothed Assumed to be 0 if omitted which means that all pixels are smoothed.
ThresholdMedianSmoother() - Constructor for class skyview.data.ThresholdMedianSmoother
  Parse the settings and set things up to do the processing
tile(double[]) - Method in class skyview.geometry.projecter.Hpx
  Return the tile number corresponding to the nominal projection location.
tile(int, int, int, int) - Method in class skyview.geometry.projecter.Toa
TileCenters - Class in skyview.tile
TileCenters() - Constructor for class skyview.tile.TileCenters
tiledPixel(long) - Method in class skyview.survey.HipsImage
Tiler - Interface in skyview.tile
  This interface defines methods for generating a set of tiles over a region of the sky.
tissot(double, double) - Method in class skyview.geometry.projecter.Car
  Return the Tissot indicatrix for point
tissot(double, double) - Method in class skyview.geometry.projecter.Tan
  Get the Tissot parameters.
tissot(double, double) - Method in class skyview.geometry.Projecter
  Return the Tissot ellipse parameters for the projection.
Toa - Class in skyview.geometry.projecter
  This class provides for the translation between coordinates and an HTM-based projection.
Toa() - Constructor for class skyview.geometry.projecter.Toa
Toa.ToaDeproj - Class in skyview.geometry.projecter
  Deproject from the ToastPlane back to the unit sphere
ToaCalc - Class in skyview.geometry.projecter.toast
ToaCalc() - Constructor for class skyview.geometry.projecter.toast.ToaCalc
ToaDeproj() - Constructor for class skyview.geometry.projecter.Toa.ToaDeproj
ToaDeriv - Class in skyview.geometry.projecter.toast
ToaDeriv() - Constructor for class skyview.geometry.projecter.toast.ToaDeriv
ToaGrid - Class in skyview.geometry.projecter.toast
ToaGrid() - Constructor for class skyview.geometry.projecter.toast.ToaGrid
ToaLines - Class in skyview.geometry.projecter.toast
ToaLines() - Constructor for class skyview.geometry.projecter.toast.ToaLines
ToaLines2 - Class in skyview.geometry.projecter.toast
ToaLines2() - Constructor for class skyview.geometry.projecter.toast.ToaLines2
ToaPixels - Class in skyview.geometry.projecter.toast
  Print out the vertices of the pixels in a TOAST projection.
ToaPixels() - Constructor for class skyview.geometry.projecter.toast.ToaPixels
toArray() - Method in class skyview.util.SmartIntArray
  trim array before return
ToastGridder - Class in skyview.request
  This finds the correct center and scale for a user a TOAST grid output.
ToastGridder() - Constructor for class skyview.request.ToastGridder
ToastPixelSize - Class in skyview.geometry.projecter
  Calculate the distribution of areas of TOAST pixels.
ToastPixelSize() - Constructor for class skyview.geometry.projecter.ToastPixelSize
ToaTriangle - Class in skyview.geometry.projecter.toast
ToaTriangle() - Constructor for class skyview.geometry.projecter.toast.ToaTriangle
toFloat(int, FloatProcessor) - Method in class ij.process.FloatProcessor
  Returns this FloatProcessor.
toFloat(int, FloatProcessor) - Method in class ij.process.ImageProcessor
  Returns a FloatProcessor with the image or one color channel thereof.
toString() - Method in class ij.process.ImageProcessor
  Returns a string containing information about this ImageProcessor.
toString() - Method in class skyview.test.HCounter
  What is the current value of the counter expressed as a string?
Tot - Class in skyview.geometry.projecter
  This class provides for the translation between coordinates and the Tiled Octahedral Tangent projection.
Tot() - Constructor for class skyview.geometry.projecter.Tot
Tot.TotDeproj - Class in skyview.geometry.projecter
  Deproject from the plane back to the unit sphere
TotDeproj() - Constructor for class skyview.geometry.projecter.Tot.TotDeproj
trans - Variable in class skyview.geometry.Sampler
  The transformation from the output image to the input image.
transform(double[]) - Method in class skyview.geometry.Transformer
  Convert a single point.
transform(double[][], double[][]) - Method in class skyview.geometry.Transformer
  Convert an array of points where the output vectors are supplied.
transform(double[], double[]) - Method in class skyview.geometry.Converter
  Transform a vector
transform(double[], double[]) - Method in class skyview.geometry.distorter.DSS.DSSInv
  Transform a point
transform(double[], double[]) - Method in class skyview.geometry.distorter.DSS
transform(double[], double[]) - Method in class skyview.geometry.distorter.Neat.NeatInv
transform(double[], double[]) - Method in class skyview.geometry.distorter.Neat
transform(double[], double[]) - Method in class skyview.geometry.distorter.SIP.SIPinverse
  This is the basic SIP transformation.
transform(double[], double[]) - Method in class skyview.geometry.distorter.SIP
  Calculate the distorted (actual pixel) coordinates given the standard coordinates.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Ait.AitDeproj
  Deproject a point from the plane to the sphere.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Ait
transform(double[], double[]) - Method in class skyview.geometry.projecter.Arc.ArcDeproj
  Deproject a point from the plane to the sphere.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Arc
  Project a point from the sphere to the plane.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Cah.CahDeproj
transform(double[], double[]) - Method in class skyview.geometry.projecter.Cah
transform(double[], double[]) - Method in class skyview.geometry.projecter.Car.CarDeproj
  Deproject a point from the plane to the sphere.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Car
  Do the transformation
transform(double[], double[]) - Method in class skyview.geometry.projecter.Csc.CscDeproj
  Deproject a point from the plane to the sphere.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Csc
  Project a point from the sphere to the plane.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Hpx.HpxDeproj
transform(double[], double[]) - Method in class skyview.geometry.projecter.Hpx
transform(double[], double[]) - Method in class skyview.geometry.projecter.Mer.MerDeproj
  Deproject a point from the plane to the sphere.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Mer
transform(double[], double[]) - Method in class skyview.geometry.projecter.Mol.MolDeproj
  Deproject a point from the plane to the sphere.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Mol
transform(double[], double[]) - Method in class skyview.geometry.projecter.Sfl.SflDeproj
  Deproject a point from the plane to the sphere.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Sfl
  Do the transformation
transform(double[], double[]) - Method in class skyview.geometry.projecter.Sin.SinDeproj
  Deproject a point from the plane to the sphere.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Sin
  Project a point from the sphere to the plane.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Stg.StgDeproj
  Deproject a point from the plane to the sphere.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Stg
  Project a point from the sphere to the plane.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Tan.TanDeproj
  Deproject a point from the plane to the sphere.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Tan
  Project a point from the sphere to the plane.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Tea.TeaDeproj
transform(double[], double[]) - Method in class skyview.geometry.projecter.Tea
transform(double[], double[]) - Method in class skyview.geometry.projecter.Toa.ToaDeproj
transform(double[], double[]) - Method in class skyview.geometry.projecter.Toa
transform(double[], double[]) - Method in class skyview.geometry.projecter.Tot.TotDeproj
transform(double[], double[]) - Method in class skyview.geometry.projecter.Tot
transform(double[], double[]) - Method in class skyview.geometry.projecter.Zea
  Project a point from the sphere to the plane.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Zea.ZeaDeproj
  Deproject a point from the plane to the sphere.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Zpn
  Project a point from the sphere to the plane.
transform(double[], double[]) - Method in class skyview.geometry.projecter.Zpn.ZpnDeproj
  Deproject a point from the plane to the sphere.
transform(double[], double[]) - Method in class skyview.geometry.Rotater
  Multiple a vector by the matrix.
transform(double[], double[]) - Method in class skyview.geometry.Scaler
  Scale a single point where the user supplies the output.
transform(double[], double[]) - Method in class skyview.geometry.spheredistorter.Besselian.BesselianInverse
  Convert coordinates from B1950 to J2000 for epoch 1950.
transform(double[], double[]) - Method in class skyview.geometry.spheredistorter.Besselian
transform(double[], double[]) - Method in class skyview.geometry.Transformer
  Convert a single point where the output vector is supplied.
TransformationException - Exception Class in skyview.geometry
  This class is thrown when an error occurs relating to transformations among frames.
TransformationException() - Constructor for exception class skyview.geometry.TransformationException
TransformationException(String) - Constructor for exception class skyview.geometry.TransformationException
Transformer - Class in skyview.geometry
  The Transformer class is the superclass for a variety of classes that transform positions represented in one frame to another.
Transformer() - Constructor for class skyview.geometry.Transformer
translate() - Method in class heasarc.db.votable.Base64
  Translate the encoded stream to a byte array
translate(double, double) - Method in class ij.process.ImageProcessor
  Moves the image or selection vertically or horizontally by a specified number of pixels.
translate(int, int, boolean) - Method in class ij.process.ImageProcessor
  Deprecated.
  replaced by translate(x,y)
transpose() - Method in class skyview.geometry.Rotater
  Get the transpose of the Matrix.
TwoMASSGenerator - Class in skyview.survey
  This is s special class just defined for a specific 2MASS SIAP service.
TwoMASSGenerator() - Constructor for class skyview.survey.TwoMASSGenerator

## U

UNCHECKED - Static variable in class skyview.process.imagefinder.Checker
UNCHECKED - Static variable in class skyview.process.imagefinder.RectRecurse
UNCHECKED - Static variable in class skyview.sia.Checker
unit(double[]) - Static method in class skyview.geometry.Util
  Convert a coordinate pair to unit vectors
unit(double[], double[]) - Static method in class skyview.geometry.Util
  Convert a coordinate pair to unit vectors.
unit(double, double) - Static method in class skyview.geometry.Util
  Convert a coordinate pair to unit vectors
up() - Method in class skyview.test.HCounter
  Discard a level in the hierarchy.
updateComposite(int[], int) - Method in class ij.process.ImageProcessor
  CompositeImage calls this method to generate an updated color image.
updateFromFile(String) - Static method in class skyview.executive.Settings
  Try to read settings from a file
updateHeader(Header) - Method in class skyview.data.BoxSmoother
  Add information about the smoothing to the FITS header
updateHeader(Header) - Method in class skyview.data.GaussSmoother
updateHeader(Header) - Method in class skyview.data.NormedGaussSmoother
updateHeader(Header) - Method in class skyview.data.PolarData
updateHeader(Header) - Method in class skyview.data.ThresholdMedianSmoother
  Add history records to the FITS header
updateHeader(Header) - Method in class skyview.ij.IJProcessor
updateHeader(Header) - Method in class skyview.process.BackupMosaicker
  Describe the mosaicking of the image .
updateHeader(Header) - Method in class skyview.process.deedger.BoundaryAverage
  Update a FITS header with the processing done here.
updateHeader(Header) - Method in class skyview.process.deedger.BoundaryMedian
  Update a FITS header with the processing done here.
updateHeader(Header) - Method in class skyview.process.deedger.ImageMedian
  Update a FITS header with the processing done here.
updateHeader(Header) - Method in class skyview.process.Deedger
  Update a FITS header with the processing done here.
updateHeader(Header) - Method in class skyview.process.IDMosaic
  Describe the mosaicking of the image .
updateHeader(Header) - Method in class skyview.process.imagefinder.Prefetcher
  Update the FITS header to indicate what processing was done.
updateHeader(Header) - Method in class skyview.process.InfoPrint
  Describe the mosaicking of the image .
updateHeader(Header) - Method in class skyview.process.Mosaicker
  Describe the mosaicking of the image .
updateHeader(Header) - Method in class skyview.process.Processor
  Update the FITS header to indicate what processing was done.
updateHeader(Header) - Method in class skyview.request.HTMLWriter
  Update the FITS header.
updateHeader(Header) - Method in class skyview.sia.SIAWriter
  This should only be used in contexts when no FITS file is produced, so this method does nothing.
updateHeader(Header) - Method in interface skyview.survey.Survey
  Update a FITS header for an image generated from this survey.
updateHeader(Header) - Method in class skyview.survey.UserSurvey
updateHeader(Header) - Method in class skyview.survey.XMLSurvey
  Update a FITS header with information from the XML file
updateHeader(Header) - Method in class skyview.vo.CatalogPostProcessor
  Update the FITS header to indicate what processing was done.
updateHeader(Header) - Method in class skyview.vo.CatalogProcessor
  Update the FITS header to indicate what processing was done.
updateHeader(Header) - Method in class skyview.vo.ConeQuerier
updateHeader(Header, Scaler, double[], String, String) - Method in class skyview.geometry.WCS
  Write FITS WCS keywords given key values.
updateSettings() - Method in class skyview.executive.BatchCompatibility
  Update the settings.
updateSettings() - Method in class skyview.executive.SettingsFixer
  Update the settings associated with this smoother
updateSettings() - Method in interface skyview.executive.SettingsUpdater
  Update the global settings
updateSettings() - Method in class skyview.request.ToastGridder
  Update the global settings for a TOAST Tile
updateSettings() - Method in interface skyview.survey.Survey
  Update the system settings with survey specific options.
updateSettings() - Method in class skyview.survey.UserSurvey
  This is a NOP for the User survey
updateSettings() - Method in class skyview.survey.XMLSurvey
  Update the system settings
updateSettings(Image, Sampler) - Method in class skyview.request.HTMLWriter
  Update the settings before creating the appropriate HTML.
updateSettings(Image, Sampler) - Method in class skyview.request.RGBWriter
  Update the settings before creating the appropriate HTML
updatesOutput() - Method in class skyview.data.BoxSmoother
updatesOutput() - Method in class skyview.data.PolarData
updatesOutput() - Method in class skyview.data.ThresholdMedianSmoother
updatesOutput() - Method in class skyview.data.WeightedSmoother
updatesOutput() - Method in class skyview.ij.IJProcessor
updatesOutput() - Method in class skyview.process.deedger.BoundaryAverage
updatesOutput() - Method in class skyview.process.deedger.BoundaryMedian
updatesOutput() - Method in class skyview.process.deedger.ImageMedian
updatesOutput() - Method in class skyview.process.Deedger
updatesOutput() - Method in class skyview.process.imagefinder.Prefetcher
updatesOutput() - Method in class skyview.process.InfoPrint
updatesOutput() - Method in class skyview.process.Mosaicker
updatesOutput() - Method in class skyview.process.Processor
  Does this processor actually modify the output array?
updatesOutput() - Method in class skyview.request.HTMLWriter
updatesOutput() - Method in class skyview.sia.SIAWriter
updatesOutput() - Method in class skyview.vo.CatalogPostProcessor
updatesOutput() - Method in class skyview.vo.CatalogProcessor
updateURL(String) - Method in class skyview.survey.SIAPGenerator
  Do regular expression transformation if requested.
useFits() - Method in class skyview.sia.SIA
UserSurvey - Class in skyview.survey
UserSurvey() - Constructor for class skyview.survey.UserSurvey
Util - Class in skyview.geometry
Util - Class in skyview.survey
Util() - Constructor for class skyview.survey.Util
Utilities - Class in skyview.util
  utlity functions to use with SkyView
Utilities() - Constructor for class skyview.util.Utilities

## V

valid() - Method in class skyview.survey.Image
  Is this image fully available?
valid() - Method in class skyview.survey.ProxyImage
  Is this currently a fully validated image?
validate() - Method in class skyview.survey.Image
  Make sure the image is ready for detailed use.
validate() - Method in class skyview.survey.ProxyImage
  Make sure the image is read for detailed use.
validate(String, String) - Method in class skyview.request.Detainter
validate(String, String) - Method in class skyview.request.SkyViewDetainter
validPosition(double[]) - Method in class skyview.geometry.projecter.Ait
validPosition(double[]) - Method in class skyview.geometry.projecter.Arc
validPosition(double[]) - Method in class skyview.geometry.projecter.Cah.CahDeproj
validPosition(double[]) - Method in class skyview.geometry.projecter.Csc
validPosition(double[]) - Method in class skyview.geometry.projecter.Hpx
  Decide whether this is in the valid field of the HEALPix projection.
validPosition(double[]) - Method in class skyview.geometry.projecter.Mer
validPosition(double[]) - Method in class skyview.geometry.projecter.Mol
validPosition(double[]) - Method in class skyview.geometry.projecter.Sfl
validPosition(double[]) - Method in class skyview.geometry.projecter.Sin
validPosition(double[]) - Method in class skyview.geometry.projecter.Toa
validPosition(double[]) - Method in class skyview.geometry.Projecter
  Is this a valid position in the projection plane for this image.
validPosition(double[]) - Method in class skyview.geometry.projecter.Zea
validPosition(double[]) - Method in class skyview.geometry.projecter.Zpn
value(String) - Method in class net.ivoa.util.CGI
values(String) - Method in class net.ivoa.util.CGI

## W

waitForThreads() - Method in class skyview.vo.CatalogProcessor
WCS - Class in skyview.geometry
  A World Coordinate System defines a translation between celestial and pixel coordinates.
WCS(Header) - Constructor for class skyview.geometry.WCS
  Create the WCS using the definition given in the FITS header.
WCS(Header, int, int) - Constructor for class skyview.geometry.WCS
  Let the user say which axes to use
WCS(CoordinateSystem, Projection, Scaler) - Constructor for class skyview.geometry.WCS
  Create a simple WCS given a scaler, CoordinateSystem and Projection.
weight() - Method in class skyview.geometry.sampler.Clip
  Return the weight associated with the last sampling.
WeightedSmoother - Class in skyview.data
  Smooth an image using a rectangular array of weights
WeightedSmoother() - Constructor for class skyview.data.WeightedSmoother
whereInArray(double[], double) - Static method in class skyview.util.Utilities
  Find the indices of a double array that are equal a given value.
whereInArray(double[], String, double) - Static method in class skyview.util.Utilities
  Find the indices of a double array that satisfy the given criterion.
whereNaNInArray(double[]) - Static method in class skyview.util.Utilities
  Find the indices of a double array that are NaNs.
width - Variable in class ij.process.ImageProcessor
writeFooter() - Method in class skyview.request.HTMLWriter
  Write the footer for the HTML plage
writeHeader() - Method in class skyview.request.HTMLWriter
  Write the header for the HTML page
writeSIAFooter() - Method in class skyview.sia.SIA
writeSIAHeader() - Method in class skyview.sia.SIA

## X

xMax - Variable in class ij.process.ImageProcessor
xMin - Variable in class ij.process.ImageProcessor
XMLGallery - Class in skyview.request
  This class writes an HTML description of a survey based upon its XML survey file.
XMLGallery() - Constructor for class skyview.request.XMLGallery
XMLSurvey - Class in skyview.survey
  This class defines a survey based upon an XML file which contains the metadata and image information for the survey.
XMLSurvey(String) - Constructor for class skyview.survey.XMLSurvey
  Create a survey whose characteristics are given in an XML file.
XMLSurvey.ImageFinderCallBack - Class in skyview.survey
  The class the is called to find images in the Survey XML file.
XMLSurveyDescription - Class in skyview.survey
  This class writes an HTML description of a survey based upon its XML survey file.
XMLSurveyDescription() - Constructor for class skyview.survey.XMLSurveyDescription
XMLSurveyFinder - Class in skyview.survey
  This class provides functionality to translate survey names into associated survey description files.
XMLSurveyFinder() - Constructor for class skyview.survey.XMLSurveyFinder
  Set up the SurveyFinder and populate the map.
XMLSurveyFinder(boolean) - Constructor for class skyview.survey.XMLSurveyFinder
XMLSurveyFinder.SurveyLink - Class in skyview.survey
xor(int) - Method in class ij.process.FloatProcessor
xor(int) - Method in class ij.process.ImageProcessor
  Binary exclusive OR of each pixel in the image or ROI with 'value'.
Xtn - Class in skyview.geometry.projecter
  This class implements a tangent plane projection for the NEAT survey.
Xtn() - Constructor for class skyview.geometry.projecter.Xtn

## Y

yMax - Variable in class ij.process.ImageProcessor
yMin - Variable in class ij.process.ImageProcessor

## Z

Zea - Class in skyview.geometry.projecter
Zea() - Constructor for class skyview.geometry.projecter.Zea
Zea.ZeaDeproj - Class in skyview.geometry.projecter
ZeaDeproj() - Constructor for class skyview.geometry.projecter.Zea.ZeaDeproj
Zpn - Class in skyview.geometry.projecter
Zpn() - Constructor for class skyview.geometry.projecter.Zpn
Zpn.ZpnDeproj - Class in skyview.geometry.projecter
ZpnDeproj() - Constructor for class skyview.geometry.projecter.Zpn.ZpnDeproj

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