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alignment_configurator.hpp File Reference

Provides seqan3::detail::alignment_selector. More...

`#include <functional>`
`#include <tuple>`
`#include <utility>`
`#include <vector>`
`#include <seqan3/alignment/configuration/align_config_output.hpp>`
`#include <seqan3/alignment/configuration/align_config_result_type.hpp>`
`#include <seqan3/alignment/matrix/detail/alignment_score_matrix_one_column.hpp>`
`#include <seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_banded.hpp>`
`#include <seqan3/alignment/matrix/detail/alignment_trace_matrix_full.hpp>`
`#include <seqan3/alignment/matrix/detail/alignment_trace_matrix_full_banded.hpp>`
`#include <seqan3/alignment/matrix/detail/combined_score_and_trace_matrix.hpp>`
`#include <seqan3/alignment/matrix/detail/score_matrix_single_column.hpp>`
`#include <seqan3/alignment/matrix/detail/trace_matrix_full.hpp>`
`#include <seqan3/alignment/pairwise/align_result_selector.hpp>`
`#include <seqan3/alignment/pairwise/alignment_algorithm.hpp>`
`#include <seqan3/alignment/pairwise/alignment_result.hpp>`
`#include <seqan3/alignment/pairwise/detail/concept.hpp>`
`#include <seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm.hpp>`
`#include <seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm_banded.hpp>`
`#include <seqan3/alignment/pairwise/detail/policy_affine_gap_recursion.hpp>`
`#include <seqan3/alignment/pairwise/detail/policy_affine_gap_recursion_banded.hpp>`
`#include <seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion.hpp>`
`#include <seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion_banded.hpp>`
`#include <seqan3/alignment/pairwise/detail/policy_alignment_matrix.hpp>`
`#include <seqan3/alignment/pairwise/detail/policy_alignment_result_builder.hpp>`
`#include <seqan3/alignment/pairwise/detail/policy_optimum_tracker.hpp>`
`#include <seqan3/alignment/pairwise/detail/policy_optimum_tracker_simd.hpp>`
`#include <seqan3/alignment/pairwise/detail/policy_scoring_scheme.hpp>`
`#include <seqan3/alignment/pairwise/detail/type_traits.hpp>`
`#include <seqan3/alignment/pairwise/edit_distance_algorithm.hpp>`
`#include <seqan3/alignment/pairwise/policy/affine_gap_init_policy.hpp>`
`#include <seqan3/alignment/pairwise/policy/affine_gap_policy.hpp>`
`#include <seqan3/alignment/pairwise/policy/alignment_matrix_policy.hpp>`
`#include <seqan3/alignment/pairwise/policy/find_optimum_policy.hpp>`
`#include <seqan3/alignment/pairwise/policy/scoring_scheme_policy.hpp>`
`#include <seqan3/alignment/pairwise/policy/simd_affine_gap_policy.hpp>`
`#include <seqan3/alignment/pairwise/policy/simd_find_optimum_policy.hpp>`
`#include <seqan3/alignment/scoring/aminoacid_scoring_scheme.hpp>`
`#include <seqan3/alignment/scoring/detail/simd_match_mismatch_scoring_scheme.hpp>`
`#include <seqan3/alignment/scoring/detail/simd_matrix_scoring_scheme.hpp>`
`#include <seqan3/alignment/scoring/nucleotide_scoring_scheme.hpp>`
`#include <seqan3/core/detail/deferred_crtp_base.hpp>`
`#include <seqan3/core/detail/template_inspection.hpp>`
`#include <seqan3/utility/simd/simd.hpp>`
`#include <seqan3/utility/tuple/concept.hpp>`
`#include <seqan3/utility/type_traits/lazy_conditional.hpp>`
`#include <seqan3/utility/views/type_reduce.hpp>`
`#include <seqan3/utility/views/zip.hpp>`
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## Namespaces

namespace | seqan3
| The main SeqAn3 namespace.

## Detailed Description

Provides seqan3::detail::alignment_selector.

Author
  Rene Rahn <rene.rahn AT fu-berlin.de>

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