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align_config_method.hpp File Reference

Provides global and local alignment configurations. More...

`#include <seqan3/alignment/configuration/detail.hpp>`
`#include <seqan3/core/configuration/pipeable_config_element.hpp>`
`#include <seqan3/core/detail/empty_type.hpp>`
`#include <seqan3/core/detail/strong_type.hpp>`
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## Classes

struct | seqan3::align_cfg::free_end_gaps_sequence1_leading
| A strong type representing free_end_gaps_sequence1_leading of the seqan3::align_cfg::method_global. More...
struct | seqan3::align_cfg::free_end_gaps_sequence1_trailing
| A strong type representing free_end_gaps_sequence1_trailing of the seqan3::align_cfg::method_global. More...
struct | seqan3::align_cfg::free_end_gaps_sequence2_leading
| A strong type representing free_end_gaps_sequence2_leading of the seqan3::align_cfg::method_global. More...
struct | seqan3::align_cfg::free_end_gaps_sequence2_trailing
| A strong type representing free_end_gaps_sequence2_trailing of the seqan3::align_cfg::method_global. More...
class | seqan3::align_cfg::method_global
| Sets the global alignment method. More...
class | seqan3::align_cfg::method_local
| Sets the local alignment method. More...

## Namespaces

namespace | seqan3
| The main SeqAn3 namespace.
namespace | seqan3::align_cfg
| A special sub namespace for the alignment configurations.

## Detailed Description

Provides global and local alignment configurations.

Author
  Joshua Kim <joshua.kim AT fu-berlin.de>
  Rene Rahn <rene.rahn AT fu-berlin.de>
  Jörg Winkler <j.winkler AT fu-berlin.de>
  Wiep van der Toorn <w.vandertoorn AT fu-berlin.de>
  Lydia Buntrock <lydia.buntrock AT fu-berlin.de>

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