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seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > Member List

This is the complete list of members for seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, including all inherited members.

begin() | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline
cigar_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
const_iterator typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
const_reference typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
difference_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
end() noexcept | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline
field_ids typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
field_types typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
flag_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
front() noexcept | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline
header() | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline
header_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
id_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
iterator typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
mapq_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
mate_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
operator=(sam_file_input const &)=delete | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
operator=(sam_file_input &&)=default | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
options | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
quality_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
record_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
ref_id_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
ref_offset_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
ref_sequence_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
reference typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
sam_file_input()=delete | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
sam_file_input(sam_file_input const &)=delete | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
sam_file_input(sam_file_input &&)=default | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
sam_file_input(std::filesystem::path filename, selected_field_ids const &fields_tag=selected_field_ids{}) | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline
sam_file_input(stream_t &stream, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{}) | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline
sam_file_input(stream_t &&stream, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{}) | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline
sam_file_input(std::filesystem::path filename, typename traits_type::ref_ids &ref_ids, typename traits_type::ref_sequences &ref_sequences, selected_field_ids const &fields_tag=selected_field_ids{}) | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline
sam_file_input(stream_t &stream, typename traits_type::ref_ids &ref_ids, typename traits_type::ref_sequences &ref_sequences, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{}) | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline
sam_file_input(stream_t &&stream, typename traits_type::ref_ids &ref_ids, typename traits_type::ref_sequences &ref_sequences, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{}) | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline
sam_file_input(stream_type &&stream, file_format const &, selected_field_ids const &) -> sam_file_input< typename sam_file_input<>::traits_type, selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related
sam_file_input(stream_type &stream, file_format const &, selected_field_ids const &) -> sam_file_input< typename sam_file_input<>::traits_type, selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related
sam_file_input(stream_type &&stream, file_format const &) -> sam_file_input< typename sam_file_input<>::traits_type, typename sam_file_input<>::selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related
sam_file_input(stream_type &stream, file_format const &) -> sam_file_input< typename sam_file_input<>::traits_type, typename sam_file_input<>::selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related
sam_file_input(std::filesystem::path path, ref_ids_t &, ref_sequences_t &, selected_field_ids const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, selected_field_ids, typename sam_file_input<>::valid_formats > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related
sam_file_input(std::filesystem::path path, ref_ids_t &, ref_sequences_t &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, typename sam_file_input<>::selected_field_ids, typename sam_file_input<>::valid_formats > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related
sam_file_input(stream_type &&stream, ref_ids_t &, ref_sequences_t &, file_format const &, selected_field_ids const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related
sam_file_input(stream_type &stream, ref_ids_t &, ref_sequences_t &, file_format const &, selected_field_ids const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related
sam_file_input(stream_type &&stream, ref_ids_t &, ref_sequences_t &, file_format const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, typename sam_file_input<>::selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related
sam_file_input(stream_type &stream, ref_ids_t &, ref_sequences_t &, file_format const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, typename sam_file_input<>::selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related
selected_field_ids typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
sentinel typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
sequence_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
size_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
stream_char_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
traits_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
valid_formats typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
value_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
~sam_file_input()=default | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > |

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