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hit.hpp File Reference

Provides the configuration to define the hit strategies "hit_strata", "hit_all", "hit_all_best", "hit_single_best". More...

`#include <variant>`
`#include <seqan3/core/configuration/pipeable_config_element.hpp>`
`#include <seqan3/core/detail/empty_type.hpp>`
`#include <seqan3/search/configuration/detail.hpp>`
`#include <seqan3/utility/type_pack/traits.hpp>`
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## Classes

class | seqan3::search_cfg::hit
| A dynamic configuration element to configure the hit strategy at runtime. More...
class | seqan3::search_cfg::hit_all
| Configuration element to receive all hits within the error bounds. More...
class | seqan3::search_cfg::hit_all_best
| Configuration element to receive all hits with the lowest number of errors within the error bounds. More...
class | seqan3::search_cfg::hit_single_best
| Configuration element to receive a single best hit with the lowest number of errors within the error bounds. More...
class | seqan3::search_cfg::hit_strata
| Configuration element to receive all hits with the best number of errors plus the given stratum. All hits are found with the fewest number of errors plus 'stratum'. More...

## Namespaces

namespace | seqan3
| The main SeqAn3 namespace.
namespace | seqan3::search_cfg
| A special sub namespace for the search configurations.

## Detailed Description

Provides the configuration to define the hit strategies "hit_strata", "hit_all", "hit_all_best", "hit_single_best".

Author
  Christopher Pockrandt <christopher.pockrandt AT fu-berlin.de>
  Rene Rahn <rene.rahn AT fu-berlin.de>
  Svenja Mehringer <svenja.mehringer AT fu-berlin.de>

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