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input.hpp File Reference

Provides seqan3::structure_file_input and corresponding traits classes. More...

`#include <cassert>`
`#include <filesystem>`
`#include <fstream>`
`#include <limits>`
`#include <optional>`
`#include <string>`
`#include <type_traits>`
`#include <utility>`
`#include <variant>`
`#include <vector>`
`#include <seqan3/alphabet/adaptation/char.hpp>`
`#include <seqan3/alphabet/aminoacid/aa27.hpp>`
`#include <seqan3/alphabet/nucleotide/rna15.hpp>`
`#include <seqan3/alphabet/nucleotide/rna5.hpp>`
`#include <seqan3/alphabet/structure/dssp9.hpp>`
`#include <seqan3/alphabet/structure/structured_aa.hpp>`
`#include <seqan3/io/detail/in_file_iterator.hpp>`
`#include <seqan3/io/detail/misc_input.hpp>`
`#include <seqan3/io/detail/record.hpp>`
`#include <seqan3/io/exception.hpp>`
`#include <seqan3/io/stream/concept.hpp>`
`#include <seqan3/io/structure_file/format_vienna.hpp>`
`#include <seqan3/io/structure_file/input_format_concept.hpp>`
`#include <seqan3/io/structure_file/input_options.hpp>`
`#include <seqan3/io/structure_file/record.hpp>`
`#include <seqan3/utility/container/concept.hpp>`
`#include <seqan3/utility/type_list/traits.hpp>`
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## Classes

class | seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
| A class for reading structured sequence files, e.g. Stockholm, Connect, Vienna, ViennaRNA bpp matrix ... More...
struct | seqan3::structure_file_input_default_traits_aa
| A traits type that specifies input as amino acids. More...
struct | seqan3::structure_file_input_default_traits_rna
| The default traits for seqan3::structure_file_input. More...

## Namespaces

namespace | seqan3
| The main SeqAn3 namespace.

## Detailed Description

Provides seqan3::structure_file_input and corresponding traits classes.

Author
  Jörg Winkler <j.winkler AT fu-berlin.de>

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