Loading...
Searching...
No Matches
align_config_gap_cost_affine.hpp File Reference

Provides seqan3::align_config::gap_cost_affine. More...

`#include <seqan3/alignment/configuration/detail.hpp>`
`#include <seqan3/core/configuration/pipeable_config_element.hpp>`
`#include <seqan3/core/detail/strong_type.hpp>`
Include dependency graph for align_config_gap_cost_affine.hpp:
This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

## Classes

struct | seqan3::align_cfg::extension_score
| A strong type of underlying type int32_t that represents the score (usually negative) of any character against a gap character. More...
class | seqan3::align_cfg::gap_cost_affine
| A configuration element for the affine gap cost scheme. More...
struct | seqan3::align_cfg::open_score
| A strong type of underlying type int32_t that represents a score (usually negative) that is incurred once per stretch of consecutive gaps. More...

## Namespaces

namespace | seqan3
| The main SeqAn3 namespace.
namespace | seqan3::align_cfg
| A special sub namespace for the alignment configurations.

## Detailed Description

Provides seqan3::align_config::gap_cost_affine.

Author
  Rene Rahn <rene.rahn AT fu-berlin.de>
  Jörg Winkler <j.winkler AT fu-berlin.de>
  Hannes Hauswedell <hannes.hauswedell AT fu-berlin.de>
  Wiep van der Toorn <w.vandertoorn AT fu-berlin.de>

Hide me