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Here is a list of all documented functions with links to the class documentation for each member:

### - s -

- sam_file_header() : seqan3::sam_file_header< ref_ids_type >
- sam_file_input() : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
- sam_file_output() : seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
- sam_record() : seqan3::sam_record< field_types, field_ids >
- score() : scoring_scheme_for, seqan3::alignment_result< alignment_result_value_t >, seqan3::hamming_scoring_scheme, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
- score_type() : scoring_scheme_for, seqan3::align_cfg::score_type< score_t >
- scoring_scheme() : seqan3::align_cfg::scoring_scheme< scoring_scheme_t >
- scoring_scheme_base() : seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
- search_result() : seqan3::search_result< query_id_type, cursor_type, reference_id_type, reference_begin_position_type >
- semialphabet_any() : seqan3::semialphabet_any< size >
- seq_alphabet() : structure_file_input_traits
- seq_container() : structure_file_input_traits
- seq_legal_alphabet() : structure_file_input_traits
- sequence() : seqan3::sam_record< field_types, field_ids >, seqan3::sequence_record< field_types, field_ids >, seqan3::structure_record< field_types, field_ids >
- sequence1_begin_position() : seqan3::alignment_result< alignment_result_value_t >
- sequence1_end_position() : seqan3::alignment_result< alignment_result_value_t >
- sequence1_id() : seqan3::alignment_result< alignment_result_value_t >
- sequence2_begin_position() : seqan3::alignment_result< alignment_result_value_t >
- sequence2_end_position() : seqan3::alignment_result< alignment_result_value_t >
- sequence2_id() : seqan3::alignment_result< alignment_result_value_t >
- sequence_alphabet() : sam_file_input_traits, sequence_file_input_traits
- sequence_container() : sam_file_input_traits, sequence_file_input_traits
- sequence_file_input() : seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
- sequence_file_output() : seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >
- sequence_legal_alphabet() : sam_file_input_traits, sequence_file_input_traits
- sequence_position() : seqan3::sam_record< field_types, field_ids >
- sequence_record() : seqan3::sequence_record< field_types, field_ids >
- sequence_structure() : seqan3::structure_record< field_types, field_ids >
- set() : seqan3::dynamic_bitset< bit_capacity >
- set_custom_matrix() : seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
- set_hamming_distance() : seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
- set_similarity_matrix() : seqan3::aminoacid_scoring_scheme< score_type >
- set_simple_scheme() : seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
- set_underlying_stream() : seqan3::debug_stream_type< char_t >
- setf() : seqan3::debug_stream_type< char_t >
- shape() : seqan3::shape
- shrink_to_fit() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::small_vector< value_type_, capacity_ >
- size() : seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::configuration< configs_t >, seqan3::dynamic_bitset< bit_capacity >, seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::gap_decorator< inner_type >, seqan3::small_vector< value_type_, capacity_ >, seqan3::type_list< types >
- small_string() : seqan3::small_string< capacity_ >
- small_vector() : seqan3::small_vector< value_type_, capacity_ >
- str() : seqan3::small_string< capacity_ >
- structure_alphabet() : structure_file_input_traits
- structure_container() : structure_file_input_traits
- structure_file_input() : seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
- structure_file_output() : seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
- structure_record() : seqan3::structure_record< field_types, field_ids >
- structured_aa() : seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >
- structured_rna() : seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
- suffix_array_interval() : seqan3::fm_index_cursor< index_t >
- swap() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::small_vector< value_type_, capacity_ >

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