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seqan3::format_bam Member List

This is the complete list of members for seqan3::format_bam, including all inherited members.

file_extensions | seqan3::format_bam | inline static
format_bam()=default | seqan3::format_bam |
format_bam(format_bam const &)=default | seqan3::format_bam |
format_bam(format_bam &&)=default | seqan3::format_bam |
operator=(format_bam const &)=default | seqan3::format_bam |
operator=(format_bam &&)=default | seqan3::format_bam |

read_alignment_record(stream_type &stream, sam_file_input_options< seq_legal_alph_type > const &options, ref_seqs_type &ref_seqs, sam_file_header< ref_ids_type > &header, stream_pos_type &position_buffer, seq_type &seq, qual_type &qual, id_type &id, ref_seq_type &ref_seq, ref_id_type &ref_id, ref_offset_type &ref_offset, cigar_type &cigar_vector, flag_type &flag, mapq_type &mapq, mate_type &mate, tag_dict_type &tag_dict, e_value_type &e_value, bit_score_type &bit_score)

seqan3::format_bam

inline protected

write_alignment_record(stream_type &stream, sam_file_output_options const &options, header_type &&header, seq_type &&seq, qual_type &&qual, id_type &&id, ref_seq_type &&ref_seq, ref_id_type &&ref_id, std::optional< int32_t > ref_offset, cigar_type &&cigar_vector, sam_flag const flag, uint8_t const mapq, mate_type &&mate, tag_dict_type &&tag_dict, double e_value, double bit_score)

seqan3::format_bam

inline protected

~format_bam()=default | seqan3::format_bam |

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