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File List
Here is a list of all documented files with brief descriptions:

raptor |
argument_parsing |
build_arguments.hpp | Provides raptor::build_arguments
build_parsing.hpp | Provides raptor::build_parsing
compute_bin_size.hpp | Provides raptor::compute_bin_size and raptor::max_bin_count
init_shared_meta.hpp | Provides raptor::init_shared_meta
memory_usage.hpp | Provides raptor::formatted_peak_ram
parse_bin_path.hpp | Provides raptor::parse_bin_path
prepare_arguments.hpp | Provides raptor::prepare_arguments
prepare_parsing.hpp | Provides raptor::prepare_parsing
search_arguments.hpp | Provides raptor::search_arguments
search_parsing.hpp | Provides raptor::search_parsing
shared.hpp | Provides raptor::validate_shape
timer.hpp | Provides raptor::timer
upgrade_arguments.hpp | Provides raptor::upgrade_arguments
upgrade_parsing.hpp | Provides raptor::upgrade_parsing
validators.hpp | Provides various validator
build |
hibf |
bin_size_in_bits.hpp | Provides raptor::hibf::bin_size_in_bits
build_data.hpp | Provides raptor::hibf::build_data
chopper_build.hpp | Provides raptor::hibf::chopper_build
chopper_pack_record.hpp | Provides raptor::hibf::chopper_pack_record
compute_kmers.hpp | Provides raptor::hibf::compute_kmers
construct_ibf.hpp | Provides raptor::hibf::construct_ibf
create_ibfs_from_chopper_pack.hpp | Provides raptor::hibf::create_ibfs_from_chopper_pack
hierarchical_build.hpp | Provides raptor::hibf::hierarchical_build
insert_into_ibf.hpp | Provides raptor::hibf::insert_into_ibf
loop_over_children.hpp | Provides raptor::hibf::loop_over_children
node_data.hpp | Provides raptor::hibf::node_data
parse_chopper_pack_header.hpp | Provides raptor::hibf::parse_chopper_pack_header
parse_chopper_pack_line.hpp | Provides raptor::hibf::parse_chopper_pack_line
read_chopper_pack_file.hpp | Provides raptor::hibf::read_chopper_pack_file
update_parent_kmers.hpp | Provides raptor::hibf::update_parent_kmers
update_user_bins.hpp | Provides raptor::hibf::update_user_bins
build_ibf.hpp | Provides raptor::build_ibf
emplace_iterator.hpp | Provides raptor::emplace_iterator
index_factory.hpp | Provides raptor::index_factory
max_count_per_partition.hpp | Provides raptor::max_count_per_partition
partition_config.hpp | Provides raptor::partition_config
raptor_build.hpp | Provides raptor::raptor_build
store_index.hpp | Provides raptor::store_index
layout |
raptor_layout.hpp | Provides raptor::chopper_layout
prepare |
compute_minimiser.hpp | Provides raptor::compute_minimiser
cutoff.hpp | Provides raptor::cutoff
search |
do_parallel.hpp | Provides raptor::do_parallel
load_index.hpp | Provides raptor::load_index
search.hpp | Provides raptor::raptor_search
search_hibf.hpp | Provides raptor::search_hibf
search_ibf.hpp | Provides raptor::search_ibf
search_partitioned_ibf.hpp | Provides raptor::search_partitioned_ibf
search_singular_ibf.hpp | Provides raptor::search_singular_ibf
sync_out.hpp | Provides raptor::sync_out
threshold |
forward_strand_minimiser.hpp | Provides raptor::threshold::forward_strand_minimiser
logspace.hpp | Provides functionality for working with probabilities in logspace
multiple_error_model.hpp | Provides raptor::threshold::multiple_error_model
one_error_model.hpp | Provides raptor::threshold::one_error_model
one_indirect_error_model.hpp | Provides raptor::threshold::one_indirect_error_model
pascal_row.hpp | Provides raptor::threshold::pascal_row
precompute_correction.hpp | Provides raptor::threshold::precompute_correction
precompute_threshold.hpp | Provides raptor::threshold::precompute_threshold
threshold.hpp | Provides raptor::threshold::threshold
threshold_parameters.hpp | Provides raptor::threshold::threshold_parameters
upgrade |
index_upgrader.hpp | Provides raptor::index_upgrader
upgrade.hpp | Provides raptor::raptor_upgrade
adjust_seed.hpp | Provides raptor::adjust_seed
call_parallel_on_bins.hpp | Provides raptor::call_parallel_on_bins
dna4_traits.hpp | Provides raptor::dna4_traits
file_reader.hpp | Provides raptor::file_reader
hierarchical_interleaved_bloom_filter.hpp | Provides raptor::hierarchical_interleaved_bloom_filter
index.hpp | Provides raptor::raptor_index
raptor.hpp | Provides raptor callable
strong_types.hpp | Provides raptor::window
version.hpp | Provides RAPTOR version macros and global variables
src |
argument_parsing |
build_parsing.cpp | Implements raptor::build_parsing
compute_bin_size.cpp | Implements raptor::compute_bin_size and raptor::max_bin_count
init_shared_meta.cpp | Implements raptor::init_shared_meta
parse_bin_path.cpp | Implements raptor::parse_bin_path
prepare_parsing.cpp | Implements raptor::prepare_parsing
search_parsing.cpp | Implements raptor::search_parsing
upgrade_parsing.cpp | Implements raptor::upgrade_parsing
build |
hibf |
bin_size_in_bits.cpp | Implements raptor::hibf::bin_size_in_bits
chopper_build.cpp | Implements raptor::hibf::chopper_build
compute_kmers.cpp | Implements raptor::hibf::compute_kmers
construct_ibf.cpp | Implements raptor::hibf::construct_ibf
create_ibfs_from_chopper_pack.cpp | Implements raptor::hibf::create_ibfs_from_chopper_pack
hierarchical_build.cpp | Implements raptor::hibf::hierarchical_build
insert_into_ibf.cpp | Implements raptor::hibf::insert_into_ibf
loop_over_children.cpp | Implements raptor::hibf::loop_over_children
parse_chopper_pack_header.cpp | Implements raptor::hibf::parse_chopper_pack_header
parse_chopper_pack_line.cpp | Implements raptor::hibf::parse_chopper_pack_line
read_chopper_pack_file.cpp | Implements raptor::hibf::read_chopper_pack_file
update_parent_kmers.cpp | Implements raptor::hibf::update_parent_kmers
update_user_bins.cpp | Implements raptor::hibf::update_user_bins
build_ibf.cpp | Implements raptor::build_ibf
max_count_per_partition.cpp | Implements raptor::max_count_per_partition
raptor_build.cpp | Implements raptor::raptor_build
layout |
raptor_layout.cpp | Implements raptor::chopper_layout
prepare |
compute_minimiser.cpp | Implements raptor::compute_minimiser
search |
raptor_search.cpp | Implements raptor::raptor_search
search_hibf.cpp | Implements raptor::search_hibf
search_ibf.cpp | Implements raptor::search_ibf
search_partitioned_ibf.cpp | Implements raptor::search_partitioned_ibf
threshold |
multiple_error_model.cpp | Implements raptor::threshold::multiple_error_model
one_error_model.cpp | Implements raptor::threshold::one_error_model
one_indirect_error_model.cpp | Implements raptor::threshold::one_indirect_error_model
pascal_row.cpp | Implements raptor::threshold::pascal_row
precompute_correction.cpp | Implements raptor::threshold::precompute_correction
precompute_threshold.cpp | Implements raptor::threshold::precompute_threshold
upgrade |
raptor_upgrade.cpp | Implements raptor::raptor_upgrade
raptor.cpp | Implements raptor