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compute_kmers.hpp
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// --------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/raptor/blob/main/LICENSE.md
// --------------------------------------------------------------------------------------------------
#pragma once
#include <robin_hood.h>
#include <raptor/argument_parsing/build_arguments.hpp>
#include <raptor/build/hibf/chopper_pack_record.hpp>
namespace raptor::hibf
{
void compute_kmers(robin_hood::unordered_flat_set<size_t> & kmers,
build_arguments const & arguments,
chopper_pack_record const & record);
} // namespace raptor::hibf
build_arguments.hpp
Provides raptor::build_arguments.
chopper_pack_record.hpp
Provides raptor::hibf::chopper_pack_record.
raptor::hibf
Must be first include.
Definition bin_size_in_bits.hpp:18
raptor::hibf::chopper_pack_record
Definition chopper_pack_record.hpp:23