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Here is a list of all file members with links to the files they belong to:

### - a -

- add_executable() : CMakeLists.txt
- add_parser_meta() : main.cpp

### - c -

- calculate_cutoff() : ibf.cpp
- calculate_minimiser() : ibf.cpp
- call_estimate() : estimate.hpp, estimate.cpp
- check_cutoffs_samples() : ibf.cpp
- check_expression() : ibf.cpp
- check_for_fasta_format() : ibf.cpp
- check_fpr() : ibf.cpp
- check_ibf() : estimate.cpp
- cmake_minimum_required() : CMakeLists.txt
- count() : ibf.hpp, ibf.cpp
- count_genome() : ibf.hpp, ibf.cpp

### - d -

- delete_bin() : ibf.hpp, ibf.cpp

### - e -

- estimate() : estimate.cpp

### - f -

- fill_hash_table() : ibf.cpp
- fill_hash_table_parallel() : ibf.cpp

### - g -

- get_expression_thresholds() : ibf.cpp
- get_filsize_per_expression_level() : ibf.cpp
- get_include_set_table() : ibf.cpp

### - i -

- ibf() : ibf.hpp, ibf.cpp
- ibf_helper() : ibf.cpp
- initialise_arguments_ibf() : main.cpp
- initialise_arguments_minimiser() : main.cpp
- initialise_min_arguments() : main.cpp
- insert() : ibf.hpp, ibf.cpp
- insert_helper() : ibf.cpp

### - l -

- load_ibf() : shared.hpp

### - m -

- main() : main.cpp
- minimiser() : ibf.hpp, ibf.cpp

### - p -

- parsing() : main.cpp

### - r -

- read_binary() : ibf.hpp, ibf.cpp
- read_binary_start() : ibf.hpp, ibf.cpp
- read_input_file_list() : main.cpp
- read_levels() : estimate.cpp, ibf.cpp
- run_needle_count() : main.cpp
- run_needle_count_genome() : main.cpp
- run_needle_delete_bin() : main.cpp
- run_needle_estimate() : main.cpp
- run_needle_ibf() : main.cpp
- run_needle_ibf_min() : main.cpp
- run_needle_insert() : main.cpp
- run_needle_insert_min() : main.cpp
- run_needle_minimiser() : main.cpp

### - s -

- se : main.cpp
- shape : main.cpp
- store_ibf() : shared.hpp

### - t -

- target_link_libraries() : CMakeLists.txt

### - w -

- w_size : main.cpp