samtools (1.21-1) unstable; urgency=medium

  * Migrate samtools 1.21 from experimental to unstable.
  * [0f4e00b] reproducible.patch: normalise Last-Update timestamp.

 -- Étienne Mollier <emollier@debian.org>  Thu, 06 Feb 2025 21:55:02 +0100

samtools (1.21-0+exp1) experimental; urgency=medium

  * Team upload.
  * New upstream version
  * d/rules: build-depend on newer htslib 1.21. Closes: #1087456

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 14 Nov 2024 12:35:59 +0100

samtools (1.20-3) unstable; urgency=medium

  * [56a4a28] d/rules: fix no-arch-all builds.
    The initial issue flown below radar due to leftover htslib version
    discrepancy, triggering the build failure too early.

 -- Étienne Mollier <emollier@debian.org>  Thu, 30 May 2024 20:52:53 +0200

samtools (1.20-2) unstable; urgency=medium

  * [832f44a] d/control: build depends on libhts-dev >= 1.20~.

 -- Étienne Mollier <emollier@debian.org>  Thu, 30 May 2024 20:03:04 +0200

samtools (1.20-1) unstable; urgency=medium

  * [6733c3c] New upstream version 1.20
  * [2b57a20] d/copyright: update copyright year.
  * [4f1b242] d/control: declare compliance to standards version 4.7.0.
  * [922ea17] d/rules: fix permissions of a data file in samtools-test.

 -- Étienne Mollier <emollier@debian.org>  Wed, 29 May 2024 15:14:04 +0200

samtools (1.19.2-1) unstable; urgency=medium

  * [3f34445] New upstream version 1.19.2
  * [e0d4f37] d/control: replace pkg-config by pkgconf.

 -- Étienne Mollier <emollier@debian.org>  Sat, 17 Feb 2024 18:22:41 +0100

samtools (1.19-1) unstable; urgency=medium

  * [73082b5] New upstream version 1.19
  * [b86781d] d/rules: adjust dh_instalchangelogs.
    Upstream NEWS file has been renamed NEWS.md.

 -- Étienne Mollier <emollier@debian.org>  Fri, 15 Dec 2023 16:17:11 +0100

samtools (1.18-1) unstable; urgency=medium

  * New upstream version
  * Autopkgtest is now using run-unit-test as user example

 -- Andreas Tille <tille@debian.org>  Wed, 08 Nov 2023 09:05:57 +0100

samtools (1.17-1) unstable; urgency=medium

  * Migrate samtools to unstable.

 -- Étienne Mollier <emollier@debian.org>  Thu, 22 Jun 2023 22:31:55 +0200

samtools (1.17-0+exp1) experimental; urgency=medium

  * New upstream version (Closes: #1037431)
  * Standards-Version: 4.6.2 (routine-update)
  * [aebe148] samtools-fasta-q-whatis.patch: unfuzz
  * [dac7490] d/control: clean obsolete package from Breaks:
  * [66a6b6e] d/control: build depends on libhts-dev (>= 1.17~)
    Trying to build against older versions will result a build failure.
  * [f3e3ea1] d/control: build depends on libncurses-dev.
    This replaces the build dependency on libncurses5-dev, which is
    flagged as obsolete by lintian.
  * [7adec78] d/*.lintian-overrides: update mismatched override
  * [dddb318] typos.patch: new patch.
    This fixes various typos caught by a few of the lintian parsers.

 -- Étienne Mollier <emollier@debian.org>  Sun, 18 Jun 2023 23:26:47 +0200

samtools (1.16.1-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.6.1 (routine-update)

 -- Andreas Tille <tille@debian.org>  Fri, 30 Sep 2022 11:45:59 +0200

samtools (1.14-1~exp2) experimental; urgency=medium

  * Bump Build-Depends: libhts-dev (>= 1.14~)
    Closes: #1001282

 -- Andreas Tille <tille@debian.org>  Wed, 08 Dec 2021 13:14:27 +0100

samtools (1.14-1~exp1) experimental; urgency=medium

  * New upstream version
  * Cleanup Breaks/Replaces

 -- Andreas Tille <tille@debian.org>  Tue, 07 Dec 2021 09:13:32 +0100

samtools (1.13-4) unstable; urgency=medium

  * [650b7a7] d/rules: only disable executable bit if test package is built.
    (Closes: #997834)

 -- Étienne Mollier <emollier@debian.org>  Mon, 25 Oct 2021 20:53:03 +0200

samtools (1.13-3) unstable; urgency=medium

  * [ee4c97e] d/rules: fix several issues in manual pages.
  * [488881b] Add fix-ftbfs-mvprintw.patch (Closes: #997180)
  * [da4dc4a] d/rules: disable executable bit on ac_test.bed.
  * [fbfd6c9] Add samtools-fasta-q-whatis.patch.
  * [4cfbf2b] d/samtools.lintian-overrides: remove *.py pattern.
  * [015d416] Adjust fix-ftbfs-mvprintw.patch metainformations.
    Thanks to John Marshall for the forward upstream!

 -- Étienne Mollier <emollier@debian.org>  Sun, 24 Oct 2021 20:25:10 +0200

samtools (1.13-2) unstable; urgency=medium

  [ Étienne Mollier ]
  * d/control: bump B-D libhts-dev (>= 1.13~); builds otherwise break against
    older htslib versions.

  [ Andreas Tille ]
  * make the build reproducible (Thanks for the patch to Chris Lamb)
    Closes: #993304

 -- Andreas Tille <tille@debian.org>  Mon, 30 Aug 2021 16:32:37 +0200

samtools (1.13-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.6.0 (routine-update)
  * watch file standard 4 (routine-update)
  * d/control: add myself to uploaders.

 -- Étienne Mollier <emollier@debian.org>  Fri, 27 Aug 2021 16:10:26 +0200

samtools (1.11-1) unstable; urgency=medium

  * New upstream version
  * Versioned Build-Depends: libhts-dev (>= 1.11)

 -- Andreas Tille <tille@debian.org>  Thu, 01 Oct 2020 16:42:22 +0200

samtools (1.10-4) unstable; urgency=medium

  * cwltools only "Suggests" not "Recommends"
  * There are no Python scripts provided in samtools any more
    Closes: #963093
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)

 -- Andreas Tille <tille@debian.org>  Fri, 19 Jun 2020 11:41:40 +0200

samtools (1.10-3) unstable; urgency=medium

  * Team upload.
  * Allow tests to fail on mipsel due to lack of memory

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 25 Dec 2019 17:15:23 +0100

samtools (1.10-2) unstable; urgency=medium

  * Team upload.
  * Samtools breaks older iva and bio-tradis

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 25 Dec 2019 14:54:48 +0100

samtools (1.10-1) unstable; urgency=medium

  * Team upload.
  * New upstream release.
  * Freshen patches

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 16 Dec 2019 16:17:22 +0100

samtools (1.9-7) unstable; urgency=medium

  * Team upload.
  * Resume building on any as htslib has regained any-i386.

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 11 Dec 2019 11:01:06 +0100

samtools (1.9-6) unstable; urgency=medium

  * Port Python2 script to Python3 using 2to3
    Closes: #945735
  * Standards-Version: 4.4.1
  * Set fields Upstream-Name in debian/copyright.
  * Set upstream metadata fields: Repository-Browse.
  * Remove obsolete fields Name from debian/upstream/metadata.

 -- Andreas Tille <tille@debian.org>  Tue, 03 Dec 2019 11:51:08 +0100

samtools (1.9-5) unstable; urgency=medium

  [ Andreas Tille ]
  * Use <!nocheck> for libio-pty-perl

  [ Michael R. Crusoe ]
  * Stop building on any-i386 due to htslib dropping i386
  * debhelper-compat 12
  * Standards-Version: 4.4.0

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sat, 17 Aug 2019 10:20:07 +0200

# Older entries have been removed from this changelog.
# To read the complete changelog use `apt changelog samtools`.
