ruby-bio (1.5.0-2ubuntu1) bionic; urgency=medium

  * debian/patches/ruby2.5.patch: Fix tests on Ruby 2.5.

 -- Daniel Watkins <daniel.watkins@canonical.com>  Thu, 08 Mar 2018 11:52:38 +0100

ruby-bio (1.5.0-2) unstable; urgency=medium

  * restore fix_definition_CutSymbol_in_test_cut_symbol.patch to avoid
    transient FTBFS because of undefined CutSymbol class
  * Bump Standards-Version to 3.9.7 (no changes needed)
  * Use https in Vcs-* fields
  * Fix syntax of copyright file

 -- Cédric Boutillier <boutil@debian.org>  Thu, 03 Mar 2016 21:32:25 +0100

ruby-bio (1.5.0-1) unstable; urgency=medium

  * Team upload.
  * New upstream version (Closes: #804068)
  * Remove upstream-applied patch fix_shebang_for_examples
  * Refresh Debian packaging using dh-make-ruby -w. Bumps Standard-Version
    to 3.9.6.

 -- Christian Hofstaedtler <zeha@debian.org>  Sun, 08 Nov 2015 22:16:50 +0000

ruby-bio (1.4.3.0001-2) unstable; urgency=low

  * debian/ruby-tests.rb: choose to define external encoding if Encoding is
    defined instead of checking version of Ruby, which was too strict.
    (Closes: #720240)
  * Tighten dependency on ruby-libxml and gem2deb to ensure Ruby 2.0 support.
    (Closes: #730644)
  * Bump Standards-Version to 3.9.5 (no changes needed)

 -- Cédric Boutillier <boutil@debian.org>  Tue, 24 Dec 2013 21:18:56 +0100

ruby-bio (1.4.3.0001-1) unstable; urgency=low

  * Imported Upstream version 1.4.3.0001
  * debian/control:
    + remove obsolete DM-Upload-Allowed flag
    + use canonical URI in Vcs-* fields
    + build-depend on ruby-test-unit
    + bump Standards-Version to 3.9.4 (no changes needed)
    + update my email address
    + drop transitional packages
  * debian/patches:
    + drop disable-test-soap.patch, fixed upstream
    + drop fix_definition_CutSymbol_in_test_cut_symbol.patch, fixed upstream
    + drop do_not_rely_on_keys_order_for_hashes.patch, fixed upstream
    + omit chi2 tests instead of commenting them out
    + add remove_rubygems.patch: remove requirement on rubygems from bin/bioruby
  * debian/ruby-tests.rb: do not exclude manually tests requiring network in
    ruby-tests.rb, now moved to a dedicated directory by upstream
  * remove debian/source/lintian-overrides, related to transitional packages
  * install KNOWN_ISSUES.rdoc as documentation
  * provide more complete copyright information

 -- Cédric Boutillier <boutil@debian.org>  Tue, 06 Aug 2013 23:19:36 +0200

ruby-bio (1.4.2-3) unstable; urgency=low

  [ Andreas Tille ]
  * debian/upstream: Add citation information according to
    https://wiki.debian.org/UpstreamMetadata (Closes: #675061)

  [ Cédric Boutillier ]
  * Add myself to Uploaders:
  * Bump Standards-Version: to 3.9.3 (no changes needed)
  * Update debian/copyright to cover also setup.rb, sample/* and
    test/data/uniprot/p53_human.uniprot
  * debian/patches:
    + add disable_tests_using_chi2.patch, disabling randomly failing tests
    + add do_not_rely_on_keys_order_for_hashes.patch, fixing FTBFS
      (Closes: #674337)
    + add fix_shebang_for_examples.patch, ensuring the shebang in
      sample/biofetch.rb is correct
  * Build-depend on gem2deb >= 0.3.0
  * Register HTML tutorials in doc-base

 -- Cédric Boutillier <cedric.boutillier@gmail.com>  Mon, 25 Jun 2012 11:34:26 +0200

ruby-bio (1.4.2-2) unstable; urgency=low

  * Remove some tests depending on a access to the Internet. Closes: #654985
  * Add fix_definition_CutSymbol_in_test_cut_symbol.patch to ensure that
    Bio::RestrictionEnzyme::CutSymbol is defined
  * Set to extra the priority of transitional packages
  * Depends on ruby-libxml instead of libxml-ruby
    
 -- Cédric Boutillier <cedric.boutillier@gmail.com>  Fri, 17 Feb 2012 15:22:29 +0100

ruby-bio (1.4.2-1) unstable; urgency=low

  * New upstream version.
    + Fixes build failure. Closes: #642035.
  * fix typos in debian/copyright.
  * document disable-test-soap.patch.

 -- Lucas Nussbaum <lucas@debian.org>  Sun, 25 Sep 2011 11:01:38 +0200

ruby-bio (1.4.1-2) unstable; urgency=low

  * Switch to gem2deb packaging. Rename binary and source package, introduce
    transitional packages.

 -- Lucas Nussbaum <lucas@debian.org>  Thu, 28 Jul 2011 17:25:55 +0200

bioruby (1.4.1-1) unstable; urgency=low

  * New upstream version
  * debian/control:
    - Standards-Version: 3.9.1 (no changes needed)
    - Added Recommends: hmmer, mafft, muscle, probcons, sim4, t-coffee
      which are called in lib/bio/appl
    - Added Suggests: clustalw (non-free), emboss (large and thus not
      always wanted on the system just for BioRuby development)
  * Source format 3.0 (quilt)

 -- Andreas Tille <tille@debian.org>  Thu, 25 Nov 2010 16:04:31 +0100

# For older changelog entries, run 'apt-get changelog ruby-bio'
