Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL(3pm)

NAME
Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL - Create an embl file for the header with locations of where genes are in the multifasta alignment of core genes

VERSION
version 3.6.0

SYNOPSIS
Create an embl file for the header with locations of where genes are in the multifasta alignment of core genes
   use Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL;

   my $obj = Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL->new(
        output_filename => 'core_alignment_header.embl',
        multifasta_files => [
            't/data/multifasta_files/1.aln', 't/data/multifasta_files/outof_order.aln',
            't/data/multifasta_files/2.aln', 't/data/multifasta_files/3.aln'
        ],
        gene_lengths => {
            't/data/multifasta_files/1.aln'           => 1,
            't/data/multifasta_files/outof_order.aln' => 10,
            't/data/multifasta_files/2.aln'           => 100,
            't/data/multifasta_files/3.aln'           => 1000
        },
   );
   $obj->create_file;

AUTHOR
Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007