REAPR-GAPRESIZE(1)

NAME
reapr-gapresize - calculates gap sizes based on read mapping

SYNOPSIS

reapr gapresize [options] <assembly.fasta> <in.bam> <avg-fragment-length> <max-fragment-length> <outfileprefix>

OPTIONS

-g <int>
    Only consider gaps of at least this length [1]

SEE ALSO

reapr(1)