# Serialized Form

## Package edu.msu.cme.rdp.classifier

### Exception Class edu.msu.cme.rdp.classifier.ShortSequenceException

class ShortSequenceException extends IllegalArgumentException implements Serializable

#### Serialized Fields

##### message

    String message

##### seqDoc

    String seqDoc

### Exception Class edu.msu.cme.rdp.classifier.TrainingDataException

class TrainingDataException extends Exception implements Serializable

## Package edu.msu.cme.rdp.classifier.comparison

### Class edu.msu.cme.rdp.classifier.comparison.ComparisonResultTreeSet

class ComparisonResultTreeSet extends TreeSet implements Serializable

## Package edu.msu.cme.rdp.classifier.train

### Class edu.msu.cme.rdp.classifier.train.LineageSequence

class LineageSequence extends edu.msu.cme.rdp.readseq.readers.Sequence implements Serializable

#### Serialized Fields

##### ancestors

    List<String> ancestors

### Exception Class edu.msu.cme.rdp.classifier.train.NameRankDupException

class NameRankDupException extends Exception implements Serializable

## Package edu.msu.cme.rdp.classifier.train.validation

### Class edu.msu.cme.rdp.classifier.train.validation.SortedROCSet

class SortedROCSet extends TreeSet<SortedROCSet.PredictionCount> implements Serializable

## Package edu.msu.cme.rdp.classifier.utils

### Class edu.msu.cme.rdp.classifier.utils.ClassifierSequence

class ClassifierSequence extends edu.msu.cme.rdp.readseq.readers.Sequence implements Serializable

#### Serialized Fields

##### goodWordCount

    Integer goodWordCount

##### reverse

    boolean reverse

##### wordIndexArr

    int[] wordIndexArr