# Package edu.msu.cme.rdp.classifier

package edu.msu.cme.rdp.classifier

Related Packages
Package
Description
edu.msu.cme.rdp.classifier.cli
edu.msu.cme.rdp.classifier.comparison
edu.msu.cme.rdp.classifier.io
edu.msu.cme.rdp.classifier.rrnaclassifier
edu.msu.cme.rdp.classifier.train
edu.msu.cme.rdp.classifier.utils
Class
Description
ClassificationResult
This class holds the classification results for a query sequence.
Classifier
This is the class to do the classification.
ClassifierCmd
This is the legacy command line class to do the classification.
GenusWordConditionalProb
A GenusWordConditionalProb holds the index of the genus node, and the conditional probability that genus node contains the word.
HierarchyTree
A HierarchyTree holds the taxonomic information of a taxon.
RankAssignment
A RankAssignment holds the classification result of a sequence at one rank level.
ShortSequenceException
Handles exception for a short sequence.
TrainingDataException
Handles the exception occurred when parsing training information.
TrainingInfo
The TrainingInfo holds all the training information and taxonomy hierarchy information.