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ChiralSet.h
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//
// Copyright (C) 2004-2008 Greg Landrum and Rational Discovery LLC
//
// @@ All Rights Reserved @@
// This file is part of the RDKit.
// The contents are covered by the terms of the BSD license
// which is included in the file license.txt, found at the root
// of the RDKit source tree.
//
#include <RDGeneral/export.h>
#ifndef __RD_CHIRAL_SET_H__
#define __RD_CHIRAL_SET_H__
#include <RDGeneral/Invariant.h>
#include <boost/smart_ptr.hpp>
#include <vector>
namespace DistGeom {
enum class ChiralSetStructureFlags : std::uint64_t {
IN_FUSED_SMALL_RINGS =
1 << 0, // a chiral center involved in fusing 2 or more small rings
};
/*! \brief Class used to store a quartet of points and chiral volume bounds on
*them
*
*/
class RDKIT_DISTGEOMETRY_EXPORT ChiralSet {
public:
unsigned int d_idx0; // the centroid
unsigned int d_idx1;
unsigned int d_idx2;
unsigned int d_idx3;
unsigned int d_idx4;
double d_volumeLowerBound;
double d_volumeUpperBound;
std::uint64_t d_structureFlags =
0; // used to track special cases that may make embedding more difficult
ChiralSet(unsigned int pid0, unsigned int pid1, unsigned int pid2,
unsigned int pid3, unsigned int pid4, double lowerVolBound,
double upperVolBound, std::uint64_t structureFlags = 0)
: d_idx0(pid0),
d_idx1(pid1),
d_idx2(pid2),
d_idx3(pid3),
d_idx4(pid4),
d_volumeLowerBound(lowerVolBound),
d_volumeUpperBound(upperVolBound),
d_structureFlags(structureFlags) {
CHECK_INVARIANT(lowerVolBound <= upperVolBound, "Inconsistent bounds\n");
d_volumeLowerBound = lowerVolBound;
d_volumeUpperBound = upperVolBound;
}
inline double getUpperVolumeBound() const { return d_volumeUpperBound; }
inline double getLowerVolumeBound() const { return d_volumeLowerBound; }
};
typedef boost::shared_ptr<ChiralSet> ChiralSetPtr;
typedef std::vector<ChiralSetPtr> VECT_CHIRALSET;
} // namespace DistGeom
#endif
Invariant.h
CHECK_INVARIANT
#define CHECK_INVARIANT(expr, mess)
Definition Invariant.h:101
DistGeom::ChiralSet
Class used to store a quartet of points and chiral volume bounds on them.
Definition ChiralSet.h:29
DistGeom::ChiralSet::ChiralSet
ChiralSet(unsigned int pid0, unsigned int pid1, unsigned int pid2, unsigned int pid3, unsigned int pid4, double lowerVolBound, double upperVolBound, std::uint64_t structureFlags=0)
Definition ChiralSet.h:41
DistGeom::ChiralSet::d_idx4
unsigned int d_idx4
Definition ChiralSet.h:35
DistGeom::ChiralSet::d_volumeLowerBound
double d_volumeLowerBound
Definition ChiralSet.h:36
DistGeom::ChiralSet::d_idx3
unsigned int d_idx3
Definition ChiralSet.h:34
DistGeom::ChiralSet::getUpperVolumeBound
double getUpperVolumeBound() const
Definition ChiralSet.h:57
DistGeom::ChiralSet::d_idx1
unsigned int d_idx1
Definition ChiralSet.h:32
DistGeom::ChiralSet::getLowerVolumeBound
double getLowerVolumeBound() const
Definition ChiralSet.h:59
DistGeom::ChiralSet::d_volumeUpperBound
double d_volumeUpperBound
Definition ChiralSet.h:37
DistGeom::ChiralSet::d_idx0
unsigned int d_idx0
Definition ChiralSet.h:31
DistGeom::ChiralSet::d_idx2
unsigned int d_idx2
Definition ChiralSet.h:33
export.h
RDKIT_DISTGEOMETRY_EXPORT
#define RDKIT_DISTGEOMETRY_EXPORT
Definition export.h:129
DistGeom
Definition BoundsMatrix.h:20
DistGeom::VECT_CHIRALSET
std::vector< ChiralSetPtr > VECT_CHIRALSET
Definition ChiralSet.h:63
DistGeom::ChiralSetPtr
boost::shared_ptr< ChiralSet > ChiralSetPtr
Definition ChiralSet.h:62
DistGeom::ChiralSetStructureFlags
ChiralSetStructureFlags
Definition ChiralSet.h:20
DistGeom::ChiralSetStructureFlags::IN_FUSED_SMALL_RINGS
@ IN_FUSED_SMALL_RINGS