### - c -

- CachedMolHolder() : RDKit::CachedMolHolder
- CachedSmilesMolHolder() : RDKit::CachedSmilesMolHolder
- CachedTrustedSmilesMolHolder() : RDKit::CachedTrustedSmilesMolHolder
- calcChiralVolume() : DistGeom::ChiralViolationContrib
- calcCorners() : RDKit::StringRect
- calcEnergy() : ForceFields::ForceField
- calcExplicitValence() : RDKit::Atom
- calcGrad() : ForceFields::ForceField
- calcImplicitValence() : RDKit::Atom
- calcMetricMatrix() : RDDataManip::MetricMatrixCalc< vectType, entryType >
- calculateScale() : RDKit::MolDraw2D
- canGrowBiggerThan() : RDKit::FMCS::Seed
- canon_atom() : RDKit::Canon::canon_atom
- canonicalize() : RDKit::MolStandardize::TautomerEnumerator
- canonicalizeOrientation() : RDDepict::EmbeddedFrag
- canSerialize() : RDKit::CustomPropHandler , RDKit::DataStructsExplicitBitVecPropHandler
- CartesianProduct() : RDKit::CartesianProduct
- CartesianProductStrategy() : RDKit::CartesianProductStrategy
- Catalog() : RDCatalog::Catalog< entryType, paramType >
- centrePicture() : RDKit::MolDraw2D
- changeRoot() : RDKit::CIPLabeler::Digraph
- ChargeCorrection() : RDKit::MolStandardize::ChargeCorrection
- ChargeFix() : RDKit::StructureCheck::ChargeFix
- checkAllBondsToAttachmentPointPresent() : RDKit::RCore
- checkForEnd() : RDKit::ForwardSDMolSupplier
- checkIfMatchAndAppend() : RDKit::FMCS::MaximumCommonSubgraph
- checkMolStructure() : RDKit::StructureCheck::StructChecker
- checkValid() : DistGeom::BoundsMatrix
- ChemicalFeature() : ChemicalFeatures::ChemicalFeature
- ChemicalReaction() : RDKit::ChemicalReaction
- ChemicalReactionException() : RDKit::ChemicalReactionException
- ChemicalReactionParserException() : RDKit::ChemicalReactionParserException
- ChiralAtomCompareFunctor() : RDKit::Canon::ChiralAtomCompareFunctor
- ChiralSet() : DistGeom::ChiralSet
- ChiralViolationContrib() : DistGeom::ChiralViolationContrib
- choose() : RDKit::MolStandardize::LargestFragmentChooser
- chromosomeLength() : RDKit::RGroupGa
- CIPMol() : RDKit::CIPLabeler::CIPMol
- CIPMolIter() : RDKit::CIPLabeler::CIPMolSpan< T, U >::CIPMolIter
- CIPMolSpan() : RDKit::CIPLabeler::CIPMolSpan< T, U >
- cleanup() : RDKit::FPBReader
- cleanup_rdvalue() : RDKit::RDValue
- CleanupParameters() : RDKit::MolStandardize::CleanupParameters
- clear() : Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , RDKit::FingerprintVarianceScoreData , RDKit::FMCS::DuplicatedSeedCache , RDKit::FMCS::RingMatchTableSet , RDKit::FMCS::SeedSet , RDKit::FMCS::TargetMatch , RDKit::FMCS::TArray2D< T > , RDKit::RDProps , RDKit::RWMol , RDKit::StructureCheck::StructCheckerOptions , RDKit::Trajectory
- clearAllAtomBookmarks() : RDKit::ROMol
- clearAllBondBookmarks() : RDKit::ROMol
- clearAtomBookmark() : RDKit::ROMol
- clearAttachPoints() : RDKit::SubstanceGroup
- clearBits() : BitVect , ExplicitBitVect , SparseBitVect
- clearBondBookmark() : RDKit::ROMol
- clearBrackets() : RDKit::SubstanceGroup
- clearCache() : RDKit::MolChemicalFeature
- clearComputedProps() : RDKit::RDProps , RDKit::ROMol
- clearConformers() : RDKit::ROMol
- clearCStates() : RDKit::SubstanceGroup
- clearDrawing() : RDKit::MolDraw2D , RDKit::MolDraw2DCairo , RDKit::MolDraw2DJS , RDKit::MolDraw2DQt , RDKit::MolDraw2DSVG , RDKit::MolDraw2Dwx
- clearProp() : RDKit::FilterCatalogEntry , RDKit::FragCatalogEntry , RDKit::MolCatalogEntry , RDKit::RDProps
- ClearTee() : boost::logging::rdLogger
- clearTieStore() : RDKit::RGroupScorer
- clearVal() : RDKit::Dict
- clone() : RDKit::AtomInvariantsGenerator , RDKit::AtomPair::AtomPairAtomInvGenerator , RDKit::BondInvariantsGenerator , RDKit::CustomPropHandler , RDKit::DataStructsExplicitBitVecPropHandler
- Clone() : RDKit::FilterMatcherBase
- clone() : RDKit::MorganFingerprint::MorganAtomInvGenerator , RDKit::MorganFingerprint::MorganBondInvGenerator , RDKit::MorganFingerprint::MorganFeatureAtomInvGenerator , RDKit::RDKitFP::RDKitFPAtomInvGenerator
- close() : RDKit::MolSupplier , RDKit::MolWriter , RDKit::PDBWriter , RDKit::SDWriter , RDKit::SmilesWriter , RDKit::TDTWriter
- cluster() : RDPickers::HierarchicalClusterPicker
- collectVotes() : RDInfoTheory::BitCorrMatGenerator
- colour() : RDKit::DrawText , RDKit::MolDraw2D
- commitBatchEdit() : RDKit::RWMol
- commonArgumentsString() : RDKit::FingerprintArguments< OutputType >
- compact() : RDPickers::LeaderPickerState< T >
- compact_next() : RDPickers::LeaderPickerState< T >
- compare() : RDKit::Canon::bondholder , RDKit::CIPLabeler::Rule1a , RDKit::CIPLabeler::Rule1b , RDKit::CIPLabeler::Rule2 , RDKit::CIPLabeler::Rule3 , RDKit::CIPLabeler::Rule4a , RDKit::CIPLabeler::Rule4b , RDKit::CIPLabeler::Rule4c , RDKit::CIPLabeler::Rule5 , RDKit::CIPLabeler::Rule5New , RDKit::CIPLabeler::Rule6 , RDKit::CIPLabeler::Rules , RDKit::CIPLabeler::SequenceRule
- compareParams() : RDGeom::UniformGrid3D
- compareTo() : RDKit::CIPLabeler::PairList
- Composition2N() : RDKit::FMCS::Composition2N
- compute2N() : RDKit::FMCS::Composition2N
- computeBox() : RDDepict::EmbeddedFrag
- computeCostMatrix() : RDKit::MolAlign::LAP
- computeDistMat() : RDDepict::EmbeddedFrag
- computeKey() : RDKit::FMCS::SubstructureCache::HashKey
- computeMinCostPath() : RDKit::MolAlign::LAP
- computeMMFFCharges() : RDKit::MMFF::MMFFMolProperties
- computeProperties() : RDKit::Descriptors::Properties
- computeRemainingSize() : RDKit::FMCS::Seed
- computeRingMatchTable() : RDKit::FMCS::RingMatchTableSet
- Configuration() : RDKit::CIPLabeler::Configuration
- Conformer() : RDKit::Conformer
- ConformerException() : RDKit::ConformerException
- ConicToFunctionImpl() : RDKit::DrawTextFT , RDKit::DrawTextFTCairo , RDKit::DrawTextFTJS , RDKit::DrawTextFTQt , RDKit::DrawTextFTSVG
- ConrecSegment() : conrec::ConrecSegment
- const_iterator() : RDKit::MolStandardize::TautomerEnumeratorResult::const_iterator
- ConstBondIterator_() : RDKit::ConstBondIterator_
- contribs() : ForceFields::ForceField
- copy() : DistGeom::ChiralViolationContrib , DistGeom::DistViolationContrib , DistGeom::FourthDimContrib , ForceFields::CrystalFF::TorsionAngleContribM6 , ForceFields::ForceFieldContrib , ForceFields::MMFF::AngleBendContrib , ForceFields::MMFF::AngleConstraintContrib , ForceFields::MMFF::BondStretchContrib , ForceFields::MMFF::DistanceConstraintContrib , ForceFields::MMFF::EleContrib , ForceFields::MMFF::OopBendContrib , ForceFields::MMFF::PositionConstraintContrib , ForceFields::MMFF::StretchBendContrib , ForceFields::MMFF::TorsionAngleContrib , ForceFields::MMFF::TorsionConstraintContrib , ForceFields::MMFF::VdWContrib , ForceFields::UFF::AngleBendContrib , ForceFields::UFF::AngleConstraintContrib , ForceFields::UFF::BondStretchContrib , ForceFields::UFF::DistanceConstraintContrib , ForceFields::UFF::InversionContrib , ForceFields::UFF::PositionConstraintContrib , ForceFields::UFF::TorsionAngleContrib , ForceFields::UFF::TorsionConstraintContrib , ForceFields::UFF::vdWContrib , Queries::AndQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::EqualityQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::GreaterEqualQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::GreaterQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::LessEqualQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::LessQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::OrQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::RangeQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::XOrQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , RDGeom::Point2D , RDGeom::Point3D , RDGeom::Point , RDGeom::PointND , RDKit::Atom , RDKit::AtomKekulizeException , RDKit::AtomMonomerInfo , RDKit::AtomPDBResidueInfo , RDKit::AtomRingQuery , RDKit::AtomSanitizeException , RDKit::AtomValenceException , RDKit::Bond , RDKit::CartesianProductStrategy , RDKit::EnumerationStrategyBase , RDKit::EvenSamplePairsStrategy , RDKit::ExclusionList , RDKit::FilterHierarchyMatcher , RDKit::FilterMatcherBase , RDKit::FilterMatchOps::And , RDKit::FilterMatchOps::Not , RDKit::FilterMatchOps::Or , RDKit::HasPropQuery< TargetPtr > , RDKit::HasPropWithValueQuery< TargetPtr, T > , RDKit::HasPropWithValueQuery< TargetPtr, ExplicitBitVect > , RDKit::HasPropWithValueQuery< TargetPtr, std::string > , RDKit::KekulizeException , RDKit::MolEnumerator::LinkNodeOp , RDKit::MolEnumerator::MolEnumeratorOp , RDKit::MolEnumerator::PositionVariationOp , RDKit::MolEnumerator::RepeatUnitOp , RDKit::MolSanitizeException , RDKit::MolStandardize::FragmentValidation , RDKit::MolStandardize::IsotopeValidation , RDKit::MolStandardize::MolVSValidations , RDKit::MolStandardize::NeutralValidation , RDKit::MolStandardize::NoAtomValidation , RDKit::QueryAtom , RDKit::QueryBond , RDKit::RandomSampleAllBBsStrategy , RDKit::RandomSampleStrategy , RDKit::RecursiveStructureQuery , RDKit::SmartsMatcher
- copyGene() : RDKit::RGroupDecompositionChromosome
- coreWithMatches() : RDKit::RCore
- countMatches() : RDKit::SubstructLibrary
- countUserRGroups() : RDKit::RCore
- createChromosome() : RDKit::RGroupGa
- createFromParent() : RDKit::FMCS::Seed
- createPartialBond() : RDKit::RWMol
- CreateShingling() : RDKit::MHFPFingerprints::MHFPEncoder
- CrippenParamCollection() : RDKit::Descriptors::CrippenParamCollection
- crossProduct() : RDGeom::Point3D
- CubicToFunctionImpl() : RDKit::DrawTextFT , RDKit::DrawTextFTCairo , RDKit::DrawTextFTJS , RDKit::DrawTextFTQt , RDKit::DrawTextFTSVG
- CXXAtomIter() : RDKit::CXXAtomIterator< Graph, Vertex, Iterator >::CXXAtomIter
- CXXAtomIterator() : RDKit::CXXAtomIterator< Graph, Vertex, Iterator >
- CXXBondIter() : RDKit::CXXBondIterator< Graph, Edge, Iterator >::CXXBondIter
- CXXBondIterator() : RDKit::CXXBondIterator< Graph, Edge, Iterator >