### - c -

- calcEnergy() : ForceFields::ForceField
- calcExplicitValence() : RDKit::Atom
- calcGrad() : ForceFields::ForceField
- calcImplicitValence() : RDKit::Atom
- calcMetricMatrix() : RDDataManip::MetricMatrixCalc< vectType, entryType >
- calculateScale() : RDKit::MolDraw2D
- canGrowBiggerThan() : RDKit::FMCS::Seed
- canon_atom() : RDKit::Canon::canon_atom
- canonicalizeOrientation() : RDDepict::EmbeddedFrag
- Catalog() : RDCatalog::Catalog< entryType, paramType >
- checkForEnd() : RDKit::ForwardSDMolSupplier
- checkIfMatchAndAppend() : RDKit::FMCS::MaximumCommonSubgraph
- checkValid() : DistGeom::BoundsMatrix
- ChemicalFeature() : ChemicalFeatures::ChemicalFeature
- ChemicalReaction() : RDKit::ChemicalReaction
- ChemicalReactionException() : RDKit::ChemicalReactionException
- ChemicalReactionParserException() : RDKit::ChemicalReactionParserException
- ChiralAtomCompareFunctor() : RDKit::Canon::ChiralAtomCompareFunctor
- ChiralSet() : DistGeom::ChiralSet
- ChiralViolationContrib() : DistGeom::ChiralViolationContrib
- clear() : Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , RDKit::FMCS::DuplicatedSeedCache , RDKit::FMCS::RingMatchTableSet , RDKit::FMCS::SeedSet , RDKit::FMCS::TargetMatch , RDKit::FMCS::TArray2D< T > , RDKit::RWMol
- clearAllAtomBookmarks() : RDKit::ROMol
- clearAllBondBookmarks() : RDKit::ROMol
- clearAtomBookmark() : RDKit::ROMol
- clearBits() : BitVect , ExplicitBitVect , SparseBitVect
- clearBondBookmark() : RDKit::ROMol
- clearCache() : RDKit::MolChemicalFeature
- clearComputedProps() : RDKit::Atom , RDKit::Bond , RDKit::ROMol
- clearConformers() : RDKit::ROMol
- clearDrawing() : RDKit::MolDraw2D , RDKit::MolDraw2DCairo , RDKit::MolDraw2DQt , RDKit::MolDraw2DSVG , RDKit::MolDraw2Dwx
- clearProp() : RDKit::Atom , RDKit::Bond , RDKit::FragCatalogEntry , RDKit::MolCatalogEntry , RDKit::ROMol
- clearVal() : RDKit::Dict
- close() : RDKit::MolWriter , RDKit::PDBWriter , RDKit::SDWriter , RDKit::SmilesWriter , RDKit::TDTWriter
- cluster() : RDPickers::HierarchicalClusterPicker
- collectVotes() : RDInfoTheory::BitCorrMatGenerator
- colour() : RDKit::MolDraw2D
- compare() : RDKit::Canon::bondholder
- compareParams() : RDGeom::UniformGrid3D
- Composition2N() : RDKit::FMCS::Composition2N
- compute2N() : RDKit::FMCS::Composition2N
- computeBox() : RDDepict::EmbeddedFrag
- computeCostMatrix() : RDKit::MolAlign::LAP
- computeDistMat() : RDDepict::EmbeddedFrag
- computeKey() : RDKit::FMCS::SubstructureCache::HashKey
- computeMinCostPath() : RDKit::MolAlign::LAP
- computeMMFFCharges() : RDKit::MMFF::MMFFMolProperties
- computeRemainingSize() : RDKit::FMCS::Seed
- computeRingMatchTable() : RDKit::FMCS::RingMatchTableSet
- Conformer() : RDKit::Conformer
- ConformerException() : RDKit::ConformerException
- ConstBondIterator_() : RDKit::ConstBondIterator_
- contribs() : ForceFields::ForceField
- copy() : DistGeom::ChiralViolationContrib , DistGeom::DistViolationContrib , DistGeom::FourthDimContrib , ForceFields::ForceFieldContrib , ForceFields::MMFF::AngleBendContrib , ForceFields::MMFF::AngleConstraintContrib , ForceFields::MMFF::BondStretchContrib , ForceFields::MMFF::DistanceConstraintContrib , ForceFields::MMFF::EleContrib , ForceFields::MMFF::OopBendContrib , ForceFields::MMFF::PositionConstraintContrib , ForceFields::MMFF::StretchBendContrib , ForceFields::MMFF::TorsionAngleContrib , ForceFields::MMFF::TorsionConstraintContrib , ForceFields::MMFF::VdWContrib , ForceFields::UFF::AngleBendContrib , ForceFields::UFF::AngleConstraintContrib , ForceFields::UFF::BondStretchContrib , ForceFields::UFF::DistanceConstraintContrib , ForceFields::UFF::InversionContrib , ForceFields::UFF::PositionConstraintContrib , ForceFields::UFF::TorsionAngleContrib , ForceFields::UFF::TorsionConstraintContrib , ForceFields::UFF::vdWContrib , Queries::AndQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::EqualityQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::GreaterEqualQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::GreaterQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::LessEqualQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::LessQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::OrQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::Query< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::RangeQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::SetQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , Queries::XOrQuery< MatchFuncArgType, DataFuncArgType, needsConversion > , RDGeom::Point2D , RDGeom::Point3D , RDGeom::Point , RDGeom::PointND , RDKit::Atom , RDKit::AtomMonomerInfo , RDKit::AtomPDBResidueInfo , RDKit::AtomRingQuery , RDKit::Bond , RDKit::HasPropQuery< TargetPtr > , RDKit::HasPropWithValueQuery< TargetPtr, T > , RDKit::HasPropWithValueQuery< TargetPtr, std::string > , RDKit::QueryAtom , RDKit::QueryBond , RDKit::RecursiveStructureQuery
- createFromParent() : RDKit::FMCS::Seed
- createPartialBond() : RDKit::RWMol
- CrippenParamCollection() : RDKit::Descriptors::CrippenParamCollection
- crossProduct() : RDGeom::Point3D