Package rdkit :: Package Dbase :: Package Pubmed :: Module QueryParams

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# Source Code for Module rdkit.Dbase.Pubmed.QueryParams

     1  # $Id$
     2  #
     3  # Copyright (C) 2003-2006 Rational Discovery LLC
     4  #
     5  #   @@ All Rights Reserved @@
     6  #  This file is part of the RDKit.
     7  #  The contents are covered by the terms of the BSD license
     8  #  which is included in the file license.txt, found at the root
     9  #  of the RDKit source tree.
    10  #
    11  import copy
    12
    13  urlBase="http://eutils.ncbi.nlm.nih.gov/entrez/eutils"
    14  searchBase=urlBase+"/esearch.fcgi"
    15  summaryBase=urlBase+"/esummary.fcgi"
    16  fetchBase=urlBase+"/efetch.fcgi"
    17  linkBase=urlBase+"/elink.fcgi"
    18  # for links to pubmed web pages:
    19  queryBase="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi"
    20
    21  _details = {
    22    'db':'pubmed',
    23    'retmode':'xml',
    24    'tool':'RDPMTools',
    25    'email':'Info@RationalDiscovery.com',
    26    }
    27
    28 -def details():
    29    return copy.copy(_details)
    30
    31  # FIX: Allow PMID searches
    32  searchableFields={
    33    "Author":("AU","Authors' Name "),
    34    "Keyword":("MH","MeSH keyword"),
    35    "Substance":("NM","Substance Name"),
    36    "Title":("TI","Text from the article title"),
    37    "Title/Abstract":("TIAB","Text from the article title and/or abstract"),
    38    "Registry Number":("RN","CAS Registry Number"),
    39    "Subject":("SB","Pubmed Subject Subset (tox,aids,cancer,bioethics,cam,history,space,systematic)"),
    40    "Journal":("TA","Journal Name"),
    41    "Year":("DP","Publication Date"),
    42    "Affiliation":("AD","Authors' affiliation"),
    43    }
    44  searchableFieldsOrder=[
    45    "Author",
    46    "Keyword",
    47    "Title",
    48    "Title/Abstract",
    49    "Substance",
    50    "Registry Number",
    51    "Subject",
    52    "Journal",
    53    "Year",
    54    "Affiliation",
    55    ]
    56