# How to use Ray with Illumina reads

Illumina reads are readily usable.

Example with reads from all instruments:

mpiexec -np 9999 Ray \
-p Solexa_oldschool_reads_1.fastq Solexa_oldschool_reads_2.fastq \
-p Illumina_Genome_Analyzer_reads_1.fastq Illumina_Genome_Analyzer_reads_2.fastq \
-p Illumina_Genome_Analyzer_II_reads_1.fastq Illumina_Genome_Analyzer_II_reads_2.fastq \
-p Illumina_Genome_Analyzer_IIx_reads_1.fastq Illumina_Genome_Analyzer_IIx_reads_2.fastq \
-p Illumina_HiSeq_1000_TruSeq3_reads_1.fastq Illumina_HiSeq_1000_TruSeq3_reads_2.fastq \
-p Illumina_HiSeq_2000_TruSeq3_reads_1.fastq Illumina_HiSeq_2000_TruSeq3_reads_2.fastq \
-p Illumina_MiSeq_TruSeq3_reads_1.fastq -p Illumina_MiSeq_TruSeq3_reads_2.fastq 
