Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: RapMap
Source: https://github.com/COMBINE-lab/RapMap/releases
Files-Excluded: */external
                */include/spdlog
                */include/tclap

Files: *
Copyright: 2014-2016 COMputational BIology and Network Evolution lab
License: GPL-3+
    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 .
    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.
 .
 On Debian systems you can find a full copy of the GNU General Public
 License version 3 at /usr/share/common-licenses/GPL-3.
Comment: Since RapMap uses Jellyfish, it must be released under the GPL.
 However, this is currently the only GPL dependency.  If it can be
 replaced, I'd like to re-license RapMap under the BSD license.  I'd be
 happy to accept pull-requests that replace the Jellyfish components
 with a library released under a more liberal license (BSD-compatible

Files: src/EnumCoderTest.cpp
       src/EnumCoder.cpp
       src/UtilTest.cpp
       include/EnumCoder.hpp
       include/Util.hpp
       include/Const.hpp
       include/Type.hpp
Copyright: 2012-2016 Daisuke Okanohara
License: BSD-3-clause

Files: include/xxhash.h
       src/xxhash.c
Copyright: 2012-2015, Yann Collet.
License: BSD-2-clause
   Redistribution and use in source and binary forms, with or without
   modification, are permitted provided that the following conditions are
   met:
 .
       * Redistributions of source code must retain the above copyright
   notice, this list of conditions and the following disclaimer.
       * Redistributions in binary form must reproduce the above
   copyright notice, this list of conditions and the following disclaimer
   in the documentation and/or other materials provided with the
   distribution.
 .
   THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
   "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
   LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
   A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
   OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
   SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
   LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
   DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
   THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
   (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
   OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Files: include/macros.h
       include/rank9b.h
       src/rank9b.cpp
Copyright: 2007-2013 Sebastiano Vigna
License: LGPL-3+
 This library is free software; you can redistribute it and/or modify it
 under the terms of the GNU Lesser General Public License as published by the Free
 Software Foundation; either version 3 of the License, or (at your option)
 any later version.
 .
 This library is distributed in the hope that it will be useful, but
 WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
 or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License
 for more details.
 .
 On Debian systems you can find a full copy of the GNU Lesser General Public
 License version 3 at /usr/share/common-licenses/LGPL-3.

Files: include/kseq.h
Copyright: 2008-2011 Attractive Chaos <attractor@live.co.uk>
License: MIT
   Permission is hereby granted, free of charge, to any person obtaining
   a copy of this software and associated documentation files (the
   "Software"), to deal in the Software without restriction, including
   without limitation the rights to use, copy, modify, merge, publish,
   distribute, sublicense, and/or sell copies of the Software, and to
   permit persons to whom the Software is furnished to do so, subject to
   the following conditions:
 .
   The above copyright notice and this permission notice shall be
   included in all copies or substantial portions of the Software.
 .
   THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
   EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
   MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
   NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
   BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
   ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
   CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
   SOFTWARE.

Files: include/btree/*
Copyright: 2013 Google Inc. All Rights Reserved.
License: Apache-2.0
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.
 You may obtain a copy of the License at
 .
     http://www.apache.org/licenses/LICENSE-2.0
 .
 Unless required by applicable law or agreed to in writing, software
 distributed under the License is distributed on an "AS IS" BASIS,
 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 See the License for the specific language governing permissions and
 limitations under the License.
 .
 On Debian systems you can find a full copy of the Apache-2.0 license
 at /usr/share/common-licenses/Apache-2.0.


Files: debian/*
Copyright: 2016 Andreas Tille <tille@debian.org>,
                Sascha Steinbiss <satta@debian.org>
License: BSD-3-clause

License: BSD-3-clause
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions
 are met:
 .
  1. Redistributions of source code must retain the above Copyright
     notice, this list of conditions and the following disclaimer.
  2. Redistributions in binary form must reproduce the above Copyright
     notice, this list of conditions and the following disclaimer in the
     documentation and/or other materials provided with the distribution.
  3. Neither the name of the authors nor the names of its contributors
     may be used to endorse or promote products derived from this
     software without specific prior written permission.
