#!/bin/bash
set -e

# run racon with package test data
/usr/bin/racon /usr/share/doc/racon/examples/data/sample_reads.fastq.gz \
	/usr/share/doc/racon/examples/data/sample_overlaps.paf.gz \
	/usr/share/doc/racon/examples/data/sample_layout.fasta.gz > ${AUTOPKGTEST_TMP}/racon.stdout

# compare output with expected output
if diff -q ${AUTOPKGTEST_TMP}/racon.stdout debian/tests/racon.expected 2>/dev/null ; then
    echo "racon output matches expected output"
    echo "PASS"
    exit 0
fi

echo "FAIL racon output does not match debian/tests/racon.expected"
exit 1
