# Generate plots of PSI values generated by vast-tools

## Documentation for package ‘psiplot’ version 2.3.0

- DESCRIPTION file.
- Package NEWS.

## Help Pages

psiplot-package | Produce PSI and GE plots based on output from vast-tools
betaCI | Obtain CIs from the sampled values
config | Sample psiplot configuration settings for datasets 'psi' and 'crpkm'
convert_psi | Convert low/bad quality PSI values to NA
crpkm | Sample genes with cRPKM data
crpkm_counts | Sample genes with cRPKM and counts data
draw_group_means | Draw group means as horizontal lines
format_table | Format input event data
get_beta_ci | Calculate confidence intervals for error bars
get_beta_ci_subg | Calculate conficence intervals for error bars of subgrouped samples.
get_psi_samples | Get samples from PSI input table
gg_color_hue | Simulate default ggplot2 color palette
make_title | Make plot title
make_title.2 | Make plot title (version 2)
plot_event | Plot PSI values of a given alternative splicing event
plot_expr | Plot cRPKM values of a given gene
plot_multi | Plot multiple events or genes as a heatmap (experimental)
plot_multievent | Plot PSI values of multiple alternative splicing events
preprocess_sample_colors | Preprocess PSI or cRPKM data frame using configuration file
psi | Sample events with PSI data
psiplot | Produce PSI and GE plots based on output from vast-tools