Package: r-other-hms-dbmi-spp
Version: 1.15-1
Architecture: i386
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 297
Depends: r-base-core (>= 3.4.3-1), r-api-3.4, r-cran-catools, r-bioc-rsamtools, libbz2-1.0, libc6 (>= 2.4), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: gnu-r
Priority: optional
Homepage: http://compbio.med.harvard.edu/Supplements/ChIP-seq/
Description: GNU R ChIP-seq processing pipeline
 R package for anlaysis of ChIP-seq and other functional sequencing data
  * Assess overall DNA-binding signals in the data and select appropriate
    quality of tag alignment.
  * Discard or restrict positions with abnormally high number of tags.
  * Calculate genome-wide profiles of smoothed tag density and save them
    in WIG files for viewing in other browsers.
  * Calculate genome-wide profiles providing conservative statistical
    estimates of fold enrichment ratios along the genome. These can be
    exported for browser viewing, or thresholded to determine regions of
    significant enrichment/depletion.
  * Determine statistically significant point binding positions
  * Assess whether the set of point binding positions detected at a
    current sequencing depth meets saturation criteria, and if does not,
    estimate what sequencing depth would be required to do so.
