# Gene Set Analysis Toolkit WebGestaltR

## Documentation for package ‘WebGestaltR’ version 0.4.6

- DESCRIPTION file.
- Package NEWS.

## Help Pages

affinityPropagation | Affinity Propagation
formatCheck | Check Format and Read Data
GOSlimSummary | GO Slim Summary
goSlimSummary | GO Slim Summary
IDMapping | ID Mapping
idMapping | ID Mapping
idToSymbol | ID Mapping
jaccardSim | Jaccard Similarity
listArchiveURL | List WebGestalt Servers
listArchiveUrl | List WebGestalt Servers
listGeneSet | List Gene Sets
listIDType | List ID Types
listIdType | List ID Types
listOrganism | List Organisms
listReferenceSet | List Reference Sets
loadGeneSet | Load gene set data
prepareGseaInput | Prepare input for standard GSEA
prepareInputMatrixGsea | Prepare Input Matrix for GSEA
readGmt | Read GMT File
swGsea | Site Weighted Gene Set Enrichment Analysis
WebGestaltR | WebGestaltR: The R interface for enrichment analysis with WebGestalt.
WebGestaltRBatch | WebGestaltR: The R interface for enrichment analysis with WebGestalt.
WebGestaltR_batch | WebGestaltR: The R interface for enrichment analysis with WebGestalt.
weightedSetCover | Weighted Set Cover