Package: treespace
Title: Statistical Exploration of Landscapes of Phylogenetic Trees
Date: 2018-01-23
Version: 1.1.1
Authors@R: c(TJ = person("Thibaut", "Jombart", email="thibautjombart@gmail.com", role = "aut"),
 	     MK = person("Michelle", "Kendall", email="m.kendall@imperial.ac.uk", role = c("aut", "cre")),
	     JAG = person("Jacob", "Almagro-Garcia", role = "aut"),
	     CC = person("Caroline", "Colijn", role = "aut"))
Maintainer: Michelle Kendall <m.kendall@imperial.ac.uk>
Description: Tools for the exploration of distributions of phylogenetic trees.
    This package includes a 'shiny' interface which can be started from R using
    treespaceServer().
Depends: R (>= 3.1.2), ape, ade4
Imports: adegenet, adegraphics, adephylo, combinat, compiler, distory,
        fields, htmlwidgets, MASS, parallel, phangorn, phytools, Rcpp,
        RLumShiny, scatterD3, shiny, shinyBS, utils
LinkingTo: Rcpp
Suggests: ggplot2, igraph, knitr, pander, RColorBrewer, reshape2, rgl,
        rmarkdown, testthat
License: MIT + file LICENSE
LazyData: true
Collate: RcppExports.R metrics.R medTree.R treespace.R findGroves.R
        plotGroves.R plotTreeDiff.R servers.R transmissionTrees.R
        data.R makeCollapsedTree.R relatedTreeDist.R simulateIndTree.R
        tipsMRCAdepths.R treeConcordance.R
RoxygenNote: 6.0.1
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2018-01-23 11:26:37 UTC; Michelle
Author: Thibaut Jombart [aut],
  Michelle Kendall [aut, cre],
  Jacob Almagro-Garcia [aut],
  Caroline Colijn [aut]
Repository: CRAN
Date/Publication: 2018-01-23 14:02:57 UTC
Built: R 3.4.3; i686-pc-linux-gnu; 'Fri, 23 Feb 2018 08:44:36 +0100'; unix
