Package: TFMPvalue
Version: 1.0.0
Date: 2026-01-18
Title: Efficient and Accurate P-Value Computation for Position Weight
        Matrices
Description: In putative Transcription Factor Binding Sites (TFBSs) 
             identification from sequence/alignments,
             we are interested in the significance of certain match score.
             TFMPvalue provides the accurate calculation of P-value with 
             score threshold for Position Weight Matrices, 
             or the score with given P-value. 
             It is an interface to code originally made available by 
             Helene Touzet and Jean-Stephane Varre, 2007, 
             Algorithms Mol Biol:2, 15. <doi:10.1186/1748-7188-2-15>.
Authors@R: person(given = "Ge",
                  family = "Tan",
                  role = c("aut", "cre"),
                  email = "ge_tan@live.com")
Copyright: 2007 LIFL-USTL-INRIA
Imports: Rcpp(>= 0.11.1)
Depends: R (>= 4.5.0)
Suggests: testthat
LinkingTo: Rcpp
License: GPL-2
URL: https://github.com/ge11232002/TFMPvalue
BugReports: https://github.com/ge11232002/TFMPvalue/issues
Type: Package
NeedsCompilation: yes
Collate: TFMPvalue-sc2pv.R TFMPvalue-pv2sc.R TFMPvalue-lazyScore.R
        util.R
Packaged: 2026-01-18 18:31:48 UTC; gtan
Author: Ge Tan [aut, cre]
Maintainer: Ge Tan <ge_tan@live.com>
Repository: CRAN
Date/Publication: 2026-01-19 20:00:19 UTC
Built: R 4.6.0; x86_64-pc-linux-gnu; 'Mon, 04 May 2026 14:30:14 +0900'; unix
