Package: r-cran-spp
Version: 1.16.0-2
Architecture: arm64
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 424
Depends: r-base-core (>= 4.0.2-1build1), r-api-4.0, r-cran-rcpp, r-bioc-rsamtools, r-cran-catools, r-cran-bh (>= 1.66), libbz2-1.0, libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Conflicts: r-other-hms-dbmi-spp
Replaces: r-other-hms-dbmi-spp
Provides: r-other-hms-dbmi-spp
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=spp
Description: GNU R ChIP-seq processing pipeline
 R package for anlaysis of ChIP-seq and other functional sequencing data
  * Assess overall DNA-binding signals in the data and select appropriate
    quality of tag alignment.
  * Discard or restrict positions with abnormally high number of tags.
  * Calculate genome-wide profiles of smoothed tag density and save them
    in WIG files for viewing in other browsers.
  * Calculate genome-wide profiles providing conservative statistical
    estimates of fold enrichment ratios along the genome. These can be
    exported for browser viewing, or thresholded to determine regions of
    significant enrichment/depletion.
  * Determine statistically significant point binding positions
  * Assess whether the set of point binding positions detected at a
    current sequencing depth meets saturation criteria, and if does not,
    estimate what sequencing depth would be required to do so.
