Package: r-cran-shazam
Version: 1.3.2-1
Architecture: all
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 2638
Depends: r-api-4.0, r-cran-ggplot2 (>= 3.4.0), r-cran-alakazam (>= 1.4.1), r-cran-ape, r-cran-diptest, r-cran-doparallel, r-cran-dplyr (>= 1.0), r-cran-foreach, r-cran-igraph (>= 1.5.0), r-cran-iterators, r-cran-kernsmooth, r-cran-lazyeval, r-cran-mass, r-cran-progress, r-cran-rlang, r-cran-scales, r-cran-seqinr, r-cran-stringi (>= 1.1.3), r-cran-tidyr, r-cran-tidyselect
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-testthat, r-cran-tibble
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=shazam
Description: Immunoglobulin Somatic Hypermutation Analysis
 Provides a computational framework for analyzing mutations
 in immunoglobulin (Ig) sequences. Includes methods for Bayesian estimation
 of antigen-driven selection pressure, mutational load quantification,
 building of somatic hypermutation (SHM) models, and model-dependent
 distance calculations. Also includes empirically derived models
 of SHM for both mice and humans. Citations: Gupta and Vander Heiden,
 et al (2015) <doi:10.1093/bioinformatics/btv359>, Yaari, et al (2012)
 <doi:10.1093/nar/gks457>, Yaari, et al (2013) <doi:10.3389/fimmu.2013.00358>,
 Cui, et al (2016) <doi:10.4049/jimmunol.1502263>.
