# Utilities for Nonlinear Regression and Repeated Measurements Models

## Documentation for package ‘rmutil’ version 1.1.8

- DESCRIPTION file.

## Help Pages

A C D F G I L M N P Q R T U V W misc

## -- A --

as.data.frame | Methods for response, tccov, tvcov, and repeated Data Objects
as.data.frame.repeated | Methods for response, tccov, tvcov, and repeated Data Objects
as.data.frame.response | Methods for response, tccov, tvcov, and repeated Data Objects
as.data.frame.tccov | Methods for response, tccov, tvcov, and repeated Data Objects
as.data.frame.tvcov | Methods for response, tccov, tvcov, and repeated Data Objects
as.matrix | Methods for response, tccov, tvcov, and repeated Data Objects
as.matrix.repeated | Methods for response, tccov, tvcov, and repeated Data Objects
as.matrix.response | Methods for response, tccov, tvcov, and repeated Data Objects
as.matrix.tccov | Methods for response, tccov, tvcov, and repeated Data Objects
as.matrix.tvcov | Methods for response, tccov, tvcov, and repeated Data Objects

## -- C --

capply | A Fast Simplified Version of 'tapply'
coef.gnlm | Methods for response, tccov, tvcov, and repeated Data Objects
contr.mean | Contrast Matrix for Constraints about the Mean
covariates | Methods for response, tccov, tvcov, and repeated Data Objects
covariates.formulafn | Methods for formulafn Functions
covariates.repeated | Methods for response, tccov, tvcov, and repeated Data Objects
covariates.tccov | Methods for response, tccov, tvcov, and repeated Data Objects
covariates.tvcov | Methods for response, tccov, tvcov, and repeated Data Objects
covind | Methods for response, tccov, tvcov, and repeated Data Objects
covind.default | Methods for response, tccov, tvcov, and repeated Data Objects

## -- D --

DataMethods | Methods for response, tccov, tvcov, and repeated Data Objects
dbetabinom | Beta Binomial Distribution
dboxcox | Box-Cox Distribution
dburr | Burr Distribution
dconsul | Consul Distribution
ddoublebinom | Double Binomial Distribution
ddoublepois | Double Poisson Distribution
delta | Methods for response, tccov, tvcov, and repeated Data Objects
delta.repeated | Methods for response, tccov, tvcov, and repeated Data Objects
delta.response | Methods for response, tccov, tvcov, and repeated Data Objects
description | Methods for response, tccov, tvcov, and repeated Data Objects
description.default | Methods for response, tccov, tvcov, and repeated Data Objects
description.repeated | Methods for response, tccov, tvcov, and repeated Data Objects
deviance.gnlm | Methods for response, tccov, tvcov, and repeated Data Objects
df.residual.gnlm | Methods for response, tccov, tvcov, and repeated Data Objects
dftorep | Transform a Dataframe to a repeated Object
dgammacount | Gamma Count Distribution
dgextval | Generalized Extreme Value Distribution
dggamma | Generalized Gamma Distribution
dginvgauss | Generalized Inverse Gaussian Distribution
dglogis | Generalized Logistic Distribution
dgweibull | Generalized Weibull Distribution
dhjorth | Hjorth Distribution
dinvgauss | Inverse Gaussian Distribution
dlaplace | Laplace Distribution
dlevy | Levy Distribution
dmultbinom | Multiplicative Binomial Distribution
dmultpois | Multiplicative Poisson Distribution
dpareto | Pareto Distribution
dpowexp | Power Exponential Distribution
dpvfpois | Power Variance Function Poisson Distribution
dsimplex | Simplex Distribution
dskewlaplace | Skew Laplace Distribution
dtwosidedpower | Two-Sided Power Distribution

## -- F --

finterp | Formula Interpreter
finterp.data.frame | Formula Interpreter
finterp.default | Formula Interpreter
finterp.repeated | Formula Interpreter
finterp.tccov | Formula Interpreter
finterp.tvcov | Formula Interpreter
fmobj | Object Finder
fnenvir | Check Covariates and Parameters of a Function
fnenvir.data.frame | Check Covariates and Parameters of a Function
fnenvir.default | Check Covariates and Parameters of a Function
fnenvir.repeated | Check Covariates and Parameters of a Function
fnenvir.tccov | Check Covariates and Parameters of a Function
fnenvir.tvcov | Check Covariates and Parameters of a Function
formula | Methods for response, tccov, tvcov, and repeated Data Objects
formula.formulafn | Methods for formulafn Functions
formula.repeated | Methods for response, tccov, tvcov, and repeated Data Objects
formula.tccov | Methods for response, tccov, tvcov, and repeated Data Objects

## -- G --

gauss.hermite | Calculate Gauss-Hermite Quadrature Points
gettvc | Find the Most Recent Value of a Time-varying Covariate Before Each Observed Response

## -- I --

int | Vectorized Numerical Integration
int2 | Vectorized Two-dimensional Numerical Integration
iprofile | Produce Individual Time Profiles for Plotting
iprofile.default | Produce Individual Time Profiles for Plotting

## -- L --

lin.diff.eqn | Solution of Autonomous Linear Differential Equations
lvna | Create a repeated Object, Leaving NAs

## -- M --

mexp | Matrix Exponentiation
model | Methods for formulafn Functions
model.formulafn | Methods for formulafn Functions
mprofile | Produce Marginal Time Profiles for Plotting
mprofile.default | Produce Marginal Time Profiles for Plotting
mu1.0o1c | Pharmacokinetic Compartment Models
mu1.1o1c | Pharmacokinetic Compartment Models
mu1.1o2c | Pharmacokinetic Compartment Models
mu1.1o2cc | Pharmacokinetic Compartment Models
mu1.1o2cl | Pharmacokinetic Compartment Models
mu2.0o1c | Pharmacokinetic Compartment Models
mu2.0o1cfp | Pharmacokinetic Compartment Models
mu2.0o2c1 | Pharmacokinetic Compartment Models
mu2.0o2c1fp | Pharmacokinetic Compartment Models
mu2.0o2c2 | Pharmacokinetic Compartment Models
mu2.0o2c2fp | Pharmacokinetic Compartment Models
mu2.1o1c | Pharmacokinetic Compartment Models
mu2.1o1cfp | Pharmacokinetic Compartment Models

## -- N --

names | Methods for response, tccov, tvcov, and repeated Data Objects
names.repeated | Methods for response, tccov, tvcov, and repeated Data Objects
names.response | Methods for response, tccov, tvcov, and repeated Data Objects
names.tccov | Methods for response, tccov, tvcov, and repeated Data Objects
names.tvcov | Methods for response, tccov, tvcov, and repeated Data Objects
nesting | Methods for response, tccov, tvcov, and repeated Data Objects
nesting.repeated | Methods for response, tccov, tvcov, and repeated Data Objects
nesting.response | Methods for response, tccov, tvcov, and repeated Data Objects
nobs | Methods for response, tccov, tvcov, and repeated Data Objects
nobs.data.frame | Methods for response, tccov, tvcov, and repeated Data Objects
nobs.default | Methods for response, tccov, tvcov, and repeated Data Objects
nobs.response | Methods for response, tccov, tvcov, and repeated Data Objects
nobs.tvcov | Methods for response, tccov, tvcov, and repeated Data Objects

## -- P --

parameters | Methods for formulafn Functions
parameters.formulafn | Methods for formulafn Functions
pbetabinom | Beta Binomial Distribution
pboxcox | Box-Cox Distribution
pburr | Burr Distribution
pconsul | Consul Distribution
pdoublebinom | Double Binomial Distribution
pdoublepois | Double Poisson Distribution
pgammacount | Gamma Count Distribution
pgextval | Generalized Extreme Value Distribution
pggamma | Generalized Gamma Distribution
pginvgauss | Generalized Inverse Gaussian Distribution
pglogis | Generalized Logistic Distribution
pgweibull | Generalized Weibull Distribution
phjorth | Hjorth Distribution
pinvgauss | Inverse Gaussian Distribution
pkpd | Pharmacokinetic Compartment Models
plaplace | Laplace Distribution
plevy | Levy Distribution
plot.iprofile | Produce Individual Time Profiles for Plotting
plot.mprofile | Produce Marginal Time Profiles for Plotting
plot.repeated | Methods for response, tccov, tvcov, and repeated Data Objects
plot.residuals | Plot Residuals
plot.response | Methods for response, tccov, tvcov, and repeated Data Objects
pmultbinom | Multiplicative Binomial Distribution
pmultpois | Multiplicative Poisson Distribution
ppareto | Pareto Distribution
ppowexp | Power Exponential Distribution
ppvfpois | Power Variance Function Poisson Distribution
print.fmobj | Methods for response, tccov, tvcov, and repeated Data Objects
print.formulafn | Methods for formulafn Functions
print.gnlm | Methods for response, tccov, tvcov, and repeated Data Objects
print.repeated | Methods for response, tccov, tvcov, and repeated Data Objects
print.response | Methods for response, tccov, tvcov, and repeated Data Objects
print.tccov | Methods for response, tccov, tvcov, and repeated Data Objects
print.tvcov | Methods for response, tccov, tvcov, and repeated Data Objects
psimplex | Simplex Distribution
pskewlaplace | Skew Laplace Distribution
ptwosidedpower | Two-Sided Power Distribution

## -- Q --

qbetabinom | Beta Binomial Distribution
qboxcox | Box-Cox Distribution
qburr | Burr Distribution
qconsul | Consul Distribution
qdoublebinom | Double Binomial Distribution
qdoublepois | Double Poisson Distribution
qgammacount | Gamma Count Distribution
qgextval | Generalized Extreme Value Distribution
qggamma | Generalized Gamma Distribution
qginvgauss | Generalized Inverse Gaussian Distribution
qglogis | Generalized Logistic Distribution
qgweibull | Generalized Weibull Distribution
qhjorth | Hjorth Distribution
qinvgauss | Inverse Gaussian Distribution
qlaplace | Laplace Distribution
qlevy | Levy Distribution
qmultbinom | Multiplicative Binomial Distribution
qmultpois | Multiplicative Poisson Distribution
qpareto | Pareto Distribution
qpowexp | Power Exponential Distribution
qpvfpois | Power Variance Function Poisson Distribution
qsimplex | Simplex Distribution
qskewlaplace | Skew Laplace Distribution
qtwosidedpower | Two-Sided Power Distribution

## -- R --

rbetabinom | Beta Binomial Distribution
rboxcox | Box-Cox Distribution
rburr | Burr Distribution
rconsul | Consul Distribution
rdoublebinom | Double Binomial Distribution
rdoublepois | Double Poisson Distribution
read.list | Read a List of Matrices from a File for Unbalanced Repeated Measurements
read.rep | Read a Rectangular Data Set from a File to Create a repeated Object
read.surv | Read a List of Matrices from a File for Repeated Times to Events
response | Methods for response, tccov, tvcov, and repeated Data Objects
response.repeated | Methods for response, tccov, tvcov, and repeated Data Objects
response.response | Methods for response, tccov, tvcov, and repeated Data Objects
resptype | Methods for response, tccov, tvcov, and repeated Data Objects
resptype.repeated | Methods for response, tccov, tvcov, and repeated Data Objects
resptype.response | Methods for response, tccov, tvcov, and repeated Data Objects
restovec | Create a response Object
rgammacount | Gamma Count Distribution
rgextval | Generalized Extreme Value Distribution
rggamma | Generalized Gamma Distribution
rginvgauss | Generalized Inverse Gaussian Distribution
rglogis | Generalized Logistic Distribution
rgweibull | Generalized Weibull Distribution
rhjorth | Hjorth Distribution
rinvgauss | Inverse Gaussian Distribution
rlaplace | Laplace Distribution
rlevy | Levy Distribution
rmna | Create a repeated Object, Removing NAs
rmultbinom | Multiplicative Binomial Distribution
rmultpois | Multiplicative Poisson Distribution
rmutil | Utilities for Repeated Measurements Library
rpareto | Pareto Distribution
rpowexp | Power Exponential Distribution
rpvfpois | Power Variance Function Poisson Distribution
rsimplex | Simplex Distribution
rskewlaplace | Skew Laplace Distribution
rtwosidedpower | Two-Sided Power Distribution
runge.kutta | Runge-Kutta Method for Solving Differential Equations

## -- T --

tcctomat | Create a Time-constant, Inter-individual Covariate (tccov) Object
times | Methods for response, tccov, tvcov, and repeated Data Objects
times.default | Methods for response, tccov, tvcov, and repeated Data Objects
times.response | Methods for response, tccov, tvcov, and repeated Data Objects
transform | Methods for response, tccov, tvcov, and repeated Data Objects
transform.repeated | Methods for response, tccov, tvcov, and repeated Data Objects
transform.response | Methods for response, tccov, tvcov, and repeated Data Objects
transform.tccov | Methods for response, tccov, tvcov, and repeated Data Objects
transform.tvcov | Methods for response, tccov, tvcov, and repeated Data Objects
tvctomat | Create a Time-varying, Intra-individual Covariate (tvcov) Object

## -- U --

units | Methods for response, tccov, tvcov, and repeated Data Objects
units.default | Methods for response, tccov, tvcov, and repeated Data Objects
units.repeated | Methods for response, tccov, tvcov, and repeated Data Objects

## -- V --

vcov.gnlm | Methods for response, tccov, tvcov, and repeated Data Objects

## -- W --

weights | Methods for response, tccov, tvcov, and repeated Data Objects
weights.gnlm | Methods for response, tccov, tvcov, and repeated Data Objects
weights.repeated | Methods for response, tccov, tvcov, and repeated Data Objects
weights.response | Methods for response, tccov, tvcov, and repeated Data Objects
wr | Find the Response Vector and Design Matrix for a W&R Model Formula

## -- misc --

%^% | Power of a Matrix