# Format Output of Various Routines in a Suitable Way for Reports and Publication

## Documentation for package ‘Publish’ version 2023.01.17

- DESCRIPTION file.

## Help Pages

Publish-package | Publish package
acut | Automatic selection and formatting of breaks in 'cut'
ci.mean | Compute mean values with confidence intervals
ci.mean.default | Compute mean values with confidence intervals
CiTable | CiTable data
coxphSeries | Run a series of Cox regression models
Diabetes | Diabetes data of Dr John Schorling
fixRegressionTable | Expand regression coefficient table
followupTable | Summary tables for a given followup time point.
formatCI | Formatting confidence intervals
glmSeries | Run a series of generalized linear regression analyses
labelUnits | labelUnits
lazyDateCoding | Efficient coding of date variables
lazyFactorCoding | Efficient coding of factor levels
org | Wrapper function for publish with output format org
parseInteractionTerms | Parse interaction terms
plot.ci | Plot confidence intervals
plot.regressionTable | Plotting regression coefficients with confidence limits
plot.subgroupAnalysis | plot.subgroupAnalysis
plotConfidence | Plot confidence intervals
print.ci | Print confidence intervals
print.subgroupAnalysis | Printing univariate tables
print.summary.regressionTable | Formatting regression tables
print.table2x2 | print results of 2x2 contingency table analysis
print.univariateTable | Printing univariate tables
pubformat | Format numbers for publication
publish | Publishing tables and figures
publish.CauseSpecificCox | Tabulizing cause-specific hazard ratio from all causes with confidence limits and Wald test p-values.
publish.ci | Publish tables with confidence intervals
publish.coxph | Tabulize hazard ratios with confidence intervals and p-values.
publish.glm | Tabulize regression coefficients with confidence intervals and p-values.
publish.htest | Pretty printing of test results.
publish.matrix | Publishing a matrix in raw, org, latex, or muse format
publish.MIresult | Present logistic regression and Cox regression obtained with mitools::MIcombine based on smcfcs::smcfcs multiple imputation analysis
publish.riskRegression | Publishing results of riskRegression
publish.Score | Publish predictive accuracy results
publish.summary.aov | Format summary table of aov results
publish.survdiff | Alternative summary of survdiff results
regressionTable | Regression table
SpaceT | A study was made of all 26 astronauts on the first eight space shuttle flights (Bungo et.al., 1985). On a voluntary basis 17 astronauts consumed large quantities of salt and fluid prior to landing as a countermeasure to space deconditioning, while nine did not.
Spaghettiogram | Spaghettiogram
spaghettiogram | Spaghettiogram
specialFrame | Special frame
splinePlot.lrm | Plot predictions of logistic regression
stripes | Background and grid color control.
subgroupAnalysis | Subgroup Analysis - Interactions and estimates
summary.ci | Summarize confidence intervals
summary.regressionTable | Formatting regression tables
summary.subgroupAnalysis | summary.subgroupAnalysis
summary.univariateTable | Preparing univariate tables for publication
summary.utable | Preparing univariate tables for publication
sutable | Fast summary of a univariate table
table2x2 | 2x2 table calculus for teaching
trace | trace data
traceR | traceR data
Units | Add units to data set
univariateTable | Univariate table
utable | Univariate table