# Tools for Prevalence Assessment Studies

## Documentation for package ‘prevalence’ version 0.4.1

- DESCRIPTION file.
- Package NEWS.

## Help Pages

prevalence-package | Tools for prevalence assessment studies
as.matrix-method | Methods for Function 'as.matrix' in Package 'prevalence'
as.matrix-methods | Methods for Function 'as.matrix' in Package 'prevalence'
autocorr.plot-method | Plotting functions from package 'coda'
autocorr.plot-methods | Plotting functions from package 'coda'
betaExpert | Calculate the parameters of a Beta distribution based on expert information
betaPERT | Calculate the parameters of a Beta-PERT distribution
convert-methods | Methods for Function 'as.matrix' in Package 'prevalence'
define_prior | Definition of 'truePrevMulti' and 'truePrevMulti2' model
define_prior2 | Definition of 'truePrevMulti' and 'truePrevMulti2' model
define_x | Definition of 'truePrevMulti' and 'truePrevMulti2' model
densplot-method | Plotting functions from package 'coda'
densplot-methods | Plotting functions from package 'coda'
gelman.plot-method | Plotting functions from package 'coda'
gelman.plot-methods | Plotting functions from package 'coda'
plot-method | Methods for Function 'plot' in Package 'prevalence'
plot-methods | Methods for Function 'plot' in Package 'prevalence'
plot-methods-coda | Plotting functions from package 'coda'
plot.betaExpert | Calculate the parameters of a Beta distribution based on expert information
plot.betaPERT | Calculate the parameters of a Beta-PERT distribution
prev-class | Class '"prev"'
prevalence | Tools for prevalence assessment studies
print-method | Methods for Function 'print' in Package 'prevalence'
print-methods | Methods for Function 'print' in Package 'prevalence'
print.betaExpert | Calculate the parameters of a Beta distribution based on expert information
print.betaPERT | Calculate the parameters of a Beta-PERT distribution
propCI | Calculate confidence intervals for prevalences and other proportions
show-method | Methods for Function 'show' in Package 'prevalence'
show-methods | Methods for Function 'show' in Package 'prevalence'
summary-method | Methods for Function 'summary' in Package 'prevalence'
summary-methods | Methods for Function 'summary' in Package 'prevalence'
traceplot-method | Plotting functions from package 'coda'
traceplot-methods | Plotting functions from package 'coda'
truePrev | Estimate true prevalence from individuals samples
truePrevMulti | Estimate true prevalence from individuals samples using multiple tests - conditional probability scheme
truePrevMulti2 | Estimate true prevalence from individuals samples using multiple tests - covariance scheme
truePrevPools | Estimate true prevalence from pooled samples