# Multivariate Analysis and Visualization for Biological Data

## Documentation for package ‘multiDimBio’ version 1.2.1

- DESCRIPTION file.

## Help Pages

multiDimBio-package | Multivariate Analysis and Visualization for Biological Data
binomPower | Power analysis for estimating the heritability of a binomial trait
boxWhisker | A function to create a box and whisker plot by group ID
completeData | Function to impute missing data.
CondA | Treatment condition for animals contained in the data set Nuclei
CondB | Stress condition for animals contained in the data set Nuclei
Dyad | Housing dyad for animals contained in the data set Nuclei
FSelect | A Function to perform step-wise discriminant analysis using F statistics
getP | An internal function for getting empirical p values
Groups | The group ID for animals contained in the data set Nuclei
h2Estimate | Estimates the heritability of a binomial trait
IntPlot | A function to visualize the results of a MANOVA
LandscapePlot | A function to visualize the Functional Landscape of measured traits
ldaPlot | A function to visualize the results of a discriminant analysis
Loadings | A function to visualize trait loadings onto discriminant function and principle component axes
makeCompMat | A function to create a pairwise comparison matrix
MeanCent | A function to scale data to mean 0
multiDimBio | Multivariate Analysis and Visualization for Biological Data
Nuclei | Brain activity in 14 brain regions for 71 individuals
partialF | A function to compute partial F statistics
PercentMax | A function to scale data to the percent of the maximum observed
PermuteLDA | A function to determine whether two groups are in statistically different locations in multivariate space See Collyer and Adams 2007
plotBinomPower | A function to plot the results of a binomPower run
Power | A function to estimate the error rate for FSelect and PermuteLDA.
PPCA | A function to perform a probabilistic principle component analysis
Scores | Principle component scores based on the data in Nuclei
simPower | An internal function of binomPower, which actually calculates the p value
ZTrans | A function to convert data into a z-score