RELEASE HISTORY OF THE "MALDIquantForeign" PACKAGE
==================================================

Version 0.5.1 [2013-09-18]:
- Replace MALDIquant:::isMassSpectrum by MALDIquant::isMassSpectrum.
- Replace deprecated function isMassObjectList.

Version 0.5 [2013-09-08]:
- import*: add "excludePattern" argument to avoid import of specific files;
  closes #8.
- Fix totalIonCurrent test case.
- Add import("methods") to NAMESPACE (fixes #9).
- Update dependencies; now MALDIquantForeign depends on R 3.0.0.
- Replace all paste(..., sep="") by paste0.

Version 0.4 [2013-04-28]:
- Add basic import support for imzML files and Analyze 7.5 files.
- import: add removeEmptySpectra argument; closes #7.
- import: change default argument verbose to TRUE.
- .download: respects "verbose" argument now (fixes #6).
- Remove LICENSE file.

Version 0.3 [2013-03-01]:
- Add basic support for mzML export.
- Add basic import support for Ciphergen XML files.
- Add missing "usage" section in export methods manual pages.
- import: add http(s):// and ftp:// support.
- import: add uncompression support to allow import of
  zip/tar.{gz,bz2,xz}-archives.
- .files: returns only unique file names;
  affected functions: all import functions.
- .make.unique: generates c("a1", "a2") instead of c("a", "a1") and
  c("a001", ...,  "a099", "a100") instead of c("a", ..., "a98", "a99");
  affected method: export,list.
- DESCRIPTION: move base64enc, digest, readBrukerFlexData, readMzXmlData and
  XML to "Imports".
- DESCRIPTION: remove MALDIquant from the "Imports" field.

Version 0.2 [2013-01-14]:
- export: fix empty filenames.
- export,list: stop if directory doesn't exist.
- exportMsd: complete rewrite, write xml files manually instead of using the
  XML package (increasing speed).
- exportMsd: fix peaks argument.
- exportMsd tests: respect endianness.
- import: respect verbose argument in import(type=auto).

Version 0.1 [2012-12-10]:
- First public release.
- Supported file formats:
  - Import: tab, txt, csv, Bruker Daltonics *flex files, mzXML, mzML
  - Export: tab, csv, msd
