# Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis

## Documentation for package ‘GUniFrac’ version 1.4

- DESCRIPTION file.

## Help Pages

adonis3 | Permutational Multivariate Analysis of Variance Using Distance Matrices (Freedman-Lane permutation)
dmanova | Distance-based Multivariate Analysis of Variance (Analytical P-value Calculation)
GMPR | Geometric Mean of Pairwise Ratios (GMPR) Normalization for Zero-inflated Count Data
GUniFrac | Generalized UniFrac distances for comparing microbial communities.
linda | Linear (Lin) Model for Differential Abundance (DA) Analysis of High-dimensional Compositional Data
linda.plot | Plot LinDA Results
PermanovaG | Permutational Multivariate Analysis of Variance Using Multiple Distance Matrices
PermanovaG2 | Permutational Multivariate Analysis of Variance Using Multiple Distance Matrices(Freedman-Lane Permutation)
Rarefy | Rarefy a Count Table to Equal Sequencing Depth
SimulateMSeq | A Semiparametric Model-based Microbiome Sequencing Data Simulator
stool.otu.tab | Stool Microbiome OTU Count Table
throat.meta | Throat Microbiome Meta Data
throat.otu.tab | Throat Microbiome OTU Count Table
throat.tree | UPGMA Tree of Throat Microbiome OTUs
vaginal.otu.tab | Vaginal Microbiome OTU Count Table
ZicoSeq | A linear Model-based Permutation Test for Differential Abundance Analysis of Microbiome Data and Other Omics Data