# Plot Publication-Grade Gene and Genome Maps

## Documentation for package ‘genoPlotR’ version 0.8.11

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

genoPlotR-package | Plot Publication-Grade Gene and Genome Maps
annotation | Annotation class and class functions
apply_color_scheme | Apply a color scheme
artemisColors | Artemis Colors
as.annotation | Annotation class and class functions
as.comparison | Comparison class and class functions
as.dna_seg | DNA segment (dna_seg) class and class functions
as.seg_plot | seg_plot class and class functions
auto_annotate | Auto-annotate dna_segs
barto | Comparison of 4 Bartonella genomes
bbone | Mauve backbone of 4 Bartonella genomes
c.dna_seg | Concatenate dna_seg objects
chrY_subseg | Comparisons of subsegments of the Y chromosome in human and chimp
comparison | Comparison class and class functions
comparisons | Three genes data set
dna_seg | DNA segment (dna_seg) class and class functions
dna_segs | Three genes data set
gene_types | Gene types
genoPlotR | Plot Publication-Grade Gene and Genome Maps
human_nt | Human-readable nucleotide scale
is.annotation | Annotation class and class functions
is.comparison | Comparison class and class functions
is.dna_seg | DNA segment (dna_seg) class and class functions
is.seg_plot | seg_plot class and class functions
mauve_bbone | Mauve backbone of 4 Bartonella genomes
middle | Middles of a dna_seg
plot_gene_map | Plot gene and genome maps
range.annotation | Range calculation
range.comparison | Range calculation
range.dna_seg | Range calculation
read_comparison_from_blast | Reading functions
read_comparison_from_tab | Reading functions
read_dna_seg_from_embl | Reading functions
read_dna_seg_from_fasta | Reading functions
read_dna_seg_from_file | Reading functions
read_dna_seg_from_genbank | Reading functions
read_dna_seg_from_ptt | Reading functions
read_dna_seg_from_tab | Reading functions
read_functions | Reading functions
read_mauve_backbone | Reading functions
reverse | Reverse objects
reverse.comparison | Reverse objects
reverse.default | Reverse objects
reverse.dna_seg | Reverse objects
seg_plot | seg_plot class and class functions
three_genes | Three genes data set
trim | Trimming data frames or more complex objects with >= 2 numeric columns
trim.annotation | Trimming data frames or more complex objects with >= 2 numeric columns
trim.comparison | Trimming data frames or more complex objects with >= 2 numeric columns
trim.default | Trimming data frames or more complex objects with >= 2 numeric columns
trim.dna_seg | Trimming data frames or more complex objects with >= 2 numeric columns
trim.seg_plot | Trimming data frames or more complex objects with >= 2 numeric columns