Package: r-cran-alakazam
Version: 1.3.0-1
Architecture: arm64
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 2851
Depends: r-api-4.0, r-cran-ggplot2 (>= 3.4.0), r-cran-airr (>= 1.4.1), r-cran-ape, r-cran-dplyr (>= 1.0), r-cran-igraph (>= 1.5.0), r-cran-matrix (>= 1.3-0), r-cran-progress, r-cran-rcpp (>= 0.12.12), r-cran-readr, r-cran-rlang, r-cran-scales, r-cran-seqinr, r-cran-stringi, r-cran-tibble, r-cran-tidyr (>= 1.0), r-bioc-biostrings (>= 2.56.0), r-bioc-genomicalignments (>= 1.24.0), r-bioc-iranges (>= 2.22.2), libc6 (>= 2.17), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1)
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-testthat
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=alakazam
Description: Immunoglobulin Clonal Lineage and Diversity Analysis
 Alakazam is part of the Immcantation analysis framework for Adaptive
 Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of
 tools to investigate lymphocyte receptor clonal lineages, diversity,
 gene usage, and other repertoire level properties, with a focus on
 high-throughput immunoglobulin (Ig) sequencing.
 .
 Alakazam serves five main purposes:
  * Providing core functionality for other R packages in the Immcantation
    framework. This includes common tasks such as file I/O, basic DNA
    sequence manipulation, and interacting with V(D)J segment and gene
    annotations.
  * Providing an R interface for interacting with the output of the
    pRESTO and Change-O tool suites.
  * Performing lineage reconstruction on clonal populations of Ig
    sequences and analyzing the topology of the resultant lineage trees.
  * Performing clonal abundance and diversity analysis on lymphocyte
    repertoires.
  * Performing physicochemical property analyses of lymphocyte receptor
    sequences.
