# Exploratory Analyses for the Phylogenetic Comparative Method

## Documentation for package ‘adephylo’ version 1.1-17

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

.tipToRoot | Low-level auxiliary functions for adephylo
abouheif.moran | Abouheif's test based on Moran's I
bullseye | Fan-like phylogeny with possible representation of traits on tips
carni19 | Phylogeny and quantative trait of carnivora
carni70 | Phylogeny and quantitative traits of carnivora
distRoot | Compute the distance of tips to the root
distTips | Compute some phylogenetic distance between tips
listDD | List direct descendants for all nodes of a tree
listTips | List tips descendings from all nodes of a tree
lizards | Phylogeny and quantitative traits of lizards
maples | Phylogeny and quantitative traits of flowers
me.phylo | Computes Moran's eigenvectors from a tree or a phylogenetic proximity matrix
mjrochet | Phylogeny and quantitative traits of teleos fishes
moran.idx | Computes Moran's index for a variable
orthobasis.phylo | Computes Moran's eigenvectors from a tree or a phylogenetic proximity matrix
orthogram | Orthonormal decomposition of variance
palm | Phylogenetic and quantitative traits of amazonian palm trees
plot.ppca | Phylogenetic principal component analysis
ppca | Phylogenetic principal component analysis
print.ppca | Phylogenetic principal component analysis
procella | Phylogeny and quantitative traits of birds
proxTips | Compute some phylogenetic proximities between tips
scatter.ppca | Phylogenetic principal component analysis
screeplot.ppca | Phylogenetic principal component analysis
sp.tips | Find the shortest path between tips of a tree
summary.ppca | Phylogenetic principal component analysis
table.phylo4d | Graphical display of phylogeny and traits
tithonia | Phylogeny and quantitative traits of flowers
treePart | Define partitions of tips according from a tree
ungulates | Phylogeny and quantitative traits of ungulates.