Package: UCSC.utils
Title: Low-level utilities to retrieve data from the UCSC Genome
        Browser
Description: A set of low-level utilities to retrieve data from the UCSC
	Genome Browser. Most functions in the package access the data via
	the UCSC REST API but some of them query the UCSC MySQL server
	directly. Note that the primary purpose of the package is to support
	higher-level functionalities implemented in downstream packages
	like GenomeInfoDb or txdbmaker.
biocViews: Infrastructure, GenomeAssembly, Annotation,
        GenomeAnnotation, DataImport
URL: https://bioconductor.org/packages/UCSC.utils
BugReports: https://github.com/Bioconductor/UCSC.utils/issues
Version: 1.2.0
License: Artistic-2.0
Encoding: UTF-8
Authors@R: person("Hervé", "Pagès", role=c("aut", "cre"),
	          email="hpages.on.github@gmail.com")
Imports: methods, stats, httr, jsonlite, S4Vectors
Suggests: DBI, RMariaDB, GenomeInfoDb, testthat, knitr, rmarkdown,
        BiocStyle
VignetteBuilder: knitr
Collate: 00utils.R UCSC.api.url.R REST_API.R list_UCSC_genomes.R
        get_UCSC_chrom_sizes.R list_UCSC_tracks.R
        fetch_UCSC_track_data.R UCSC_dbselect.R zzz.R
git_url: https://git.bioconductor.org/packages/UCSC.utils
git_branch: RELEASE_3_20
git_last_commit: d77d73e
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 03:19:48 UTC; biocbuild
Author: Hervé Pagès [aut, cre]
Maintainer: Hervé Pagès <hpages.on.github@gmail.com>
Built: R 4.4.2; ; 'Sun, 12 Jan 2025 04:01:25 +0100'; unix
