# Foundation of array-like containers in Bioconductor

## Documentation for package ‘S4Arrays’ version 1.12.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

A B C D E I K L M N O R S T W misc

## -- A --

abind | Combine multidimensional array-like objects
abind-method | Combine multidimensional array-like objects
acbind | Combine multidimensional array-like objects
acbind-method | Combine multidimensional array-like objects
aperm-method | ArrayGrid and ArrayViewport objects
aperm.ArbitraryArrayGrid | ArrayGrid and ArrayViewport objects
aperm.DummyArrayGrid | ArrayGrid and ArrayViewport objects
aperm.RegularArrayGrid | ArrayGrid and ArrayViewport objects
aperm2 | Generalized permutation of the dimensions of an array
arbind | Combine multidimensional array-like objects
arbind-method | Combine multidimensional array-like objects
ArbitraryArrayGrid | ArrayGrid and ArrayViewport objects
ArbitraryArrayGrid-class | ArrayGrid and ArrayViewport objects
arep | Replicate array elements
arep_each | Replicate array elements
arep_each-method | Replicate array elements
arep_times | Replicate array elements
arep_times-method | Replicate array elements
Array | Array objects
array selection | Manipulation of array selections
array selections | Manipulation of array selections
Array-class | Array objects
Array-kronecker | Kronecker products on Array objects
Array-kronecker-methods | Kronecker products on Array objects
ArrayGrid | ArrayGrid and ArrayViewport objects
ArrayGrid-class | ArrayGrid and ArrayViewport objects
ArrayViewport | ArrayGrid and ArrayViewport objects
ArrayViewport-class | ArrayGrid and ArrayViewport objects
Array_kronecker | Kronecker products on Array objects
Array_kronecker-methods | Kronecker products on Array objects
array_recycling | Multidimensional array recycling
array_selection | Manipulation of array selections
array_selections | Manipulation of array selections
as.character-method | ArrayGrid and ArrayViewport objects
as.character.ArrayGrid | ArrayGrid and ArrayViewport objects
as.matrix-method | Array objects
as.matrix.Array | Array objects
as_tile | Multidimensional array recycling

## -- B --

bind arrays | Combine multidimensional array-like objects
bind-arrays | Combine multidimensional array-like objects

## -- C --

class:ArbitraryArrayGrid | ArrayGrid and ArrayViewport objects
class:Array | Array objects
class:ArrayGrid | ArrayGrid and ArrayViewport objects
class:ArrayViewport | ArrayGrid and ArrayViewport objects
class:DummyArrayGrid | ArrayGrid and ArrayViewport objects
class:DummyArrayViewport | ArrayGrid and ArrayViewport objects
class:RegularArrayGrid | ArrayGrid and ArrayViewport objects
class:SafeArrayViewport | ArrayGrid and ArrayViewport objects
class:tile | Multidimensional array recycling
classNameForDisplay-method | ArrayGrid and ArrayViewport objects
colsum | Compute column/row sums of a matrix-like object, for groups of rows/columns
colsum-method | Compute column/row sums of a matrix-like object, for groups of rows/columns

## -- D --

dim-method | ArrayGrid and ArrayViewport objects
dims | ArrayGrid and ArrayViewport objects
dims-method | ArrayGrid and ArrayViewport objects
downsample | ArrayGrid and ArrayViewport objects
downsample-method | ArrayGrid and ArrayViewport objects
DummyArrayGrid | ArrayGrid and ArrayViewport objects
DummyArrayGrid-class | ArrayGrid and ArrayViewport objects
DummyArrayViewport | ArrayGrid and ArrayViewport objects
DummyArrayViewport-class | ArrayGrid and ArrayViewport objects

## -- E --

end-method | ArrayGrid and ArrayViewport objects

## -- I --

isEmpty-method | Array objects
is_sparse | Check for sparse representation
is_sparse-method | Check for sparse representation
is_sparse<- | Check for sparse representation

## -- K --

kronecker | Kronecker products on Array objects
kronecker-method | Kronecker products on Array objects
kronecker2 | Kronecker products on Array objects

## -- L --

L-index | Manipulation of array selections
length-method | Array objects
lengths-method | ArrayGrid and ArrayViewport objects
Lindex | Manipulation of array selections
Lindex2Mindex | Manipulation of array selections

## -- M --

M-index | Manipulation of array selections
makeNindexFromArrayViewport | ArrayGrid and ArrayViewport objects
maxlength | ArrayGrid and ArrayViewport objects
maxlength-method | ArrayGrid and ArrayViewport objects
Mindex | Manipulation of array selections
Mindex2Lindex | Manipulation of array selections

## -- N --

N-index | Manipulation of array selections
Nindex | Manipulation of array selections

## -- O --

Ops-method | Multidimensional array recycling

## -- R --

ranges-method | ArrayGrid and ArrayViewport objects
read_block | Read array blocks
read_block_as_dense | Read array blocks
read_block_as_dense-method | Read array blocks
refdim | ArrayGrid and ArrayViewport objects
refdim-method | ArrayGrid and ArrayViewport objects
RegularArrayGrid | ArrayGrid and ArrayViewport objects
RegularArrayGrid-class | ArrayGrid and ArrayViewport objects
rowsum | Compute column/row sums of a matrix-like object, for groups of rows/columns

## -- S --

SafeArrayViewport | ArrayGrid and ArrayViewport objects
SafeArrayViewport-class | ArrayGrid and ArrayViewport objects
show-method | ArrayGrid and ArrayViewport objects
showAsCell-method | Array objects
start-method | ArrayGrid and ArrayViewport objects

## -- T --

t-method | Array objects
t.Array | Array objects
tile | Multidimensional array recycling
tile-class | Multidimensional array recycling
type | Get the type of the elements of an array-like object
type-method | Get the type of the elements of an array-like object

## -- W --

width-method | ArrayGrid and ArrayViewport objects
write_block | Write array blocks
write_block-method | Write array blocks

## -- misc --

[[-method | Array objects