# rWikiPathways - R client library for the WikiPathways API

## Documentation for package ‘rWikiPathways’ version 1.22.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

downloadPathwayArchive | Download Pathway Archive
findPathwayIdsByLiterature | Find Pathway WPIDs By Literature
findPathwayIDsByOrcid | Find Pathway WPIDs By ORCID
findPathwayIdsByText | Find Pathway WPIDs By Text
findPathwayIdsByXref | Find Pathway WPIDs By Xref
findPathwayNamesByLiterature | Find Pathway Names By Literature
findPathwayNamesByOrcid | Find Pathway Names By ORCID
findPathwayNamesByText | Find Pathway Names By Text
findPathwayNamesByXref | Find Pathway Names By Xref
findPathwaysByLiterature | Find Pathways By Literature
findPathwaysByOrcid | Find Pathways By ORCID
findPathwaysByText | Find Pathways By Text
findPathwaysByXref | Find Pathways By Xref
findPathwayUrlsByLiterature | Find Pathway URLs By Literature
findPathwayUrlsByOrcid | Find Pathway URLs By ORCID
findPathwayUrlsByText | Find Pathway URLs By Text
findPathwayUrlsByXref | Find Pathway URLs By Xref
getCounts | Get Counts for WikiPathways Stats
getCurationStatus | Get Curation Status of a Pathway
getCurationTagNames | DEPRECATED: Get Curation Tag Names on a Pathway
getCurationTags | DEPRECATED: Get Curation Tags on a Pathway
getEveryCurationTag | DEPRECATED: Get Every Instance of a Curation Tag
getOntologyTermIds | Get Ontology Term IDs by Pathway
getOntologyTermNames | Get Ontology Term Names by Pathway
getOntologyTerms | Get Ontology Terms by Pathway
getPathway | Get Pathway
getPathwayHistory | Get Pathway History
getPathwayIdsByCommunity | Get Pathway IDs By Community
getPathwayIdsByCurationTag | DEPRECATED: Get Pathway WPIDs by Curation Tag
getPathwayIdsByOntologyTerm | Get Pathway WPIDs by Ontology Term
getPathwayIdsByParentOntologyTerm | Get Pathway WPIDs by Parent Ontology Term
getPathwayInfo | Get Pathway Info
getPathwayNamesByCommunity | Get Pathway Names By Community
getPathwaysByCommunity | Get Pathways By Community
getPathwaysByCurationTag | DEPRECATED: Get Pathways by Curation Tag
getPathwaysByOntologyTerm | Get Pathways by Ontology Term
getPathwaysByParentOntologyTerm | Get Pathways by Parent Ontology Term
getPathwayUrlsByCommunity | Get Pathway URLs By Community
getRecentChanges | Get Recent Changes
getRecentChangesIds | Get WPIDs of Recent Changes
getRecentChangesNames | Get Pathway Names of Recent Changes
getXrefList | Get Xref List
listCommunities | List Communities
listOrganisms | List Organisms
listPathwayIds | List Pathway WPIDs
listPathwayNames | List Pathway Names
listPathways | List Pathways
listPathwayUrls | List Pathway URLs
readGMT | Read GMT File
readGMTnames | Read GMT File for Names
readPathwayGMT | Read Pathway GMT File
wikipathwaysAPI | DEPRECATED: Open Swagger docs for WikiPathways API
wikipathwaysGET | DEPRECATED: WikiPathways GET
writeGMT | Write GMT File